| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1625 |
|---|
| Symbol | |
|---|
| ID | 5670028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1942343 |
|---|
| End bp | 1943611 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641240544 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001505970 |
|---|
| Protein GI | 158313462 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGG GCGACATCGA GGACGTCGAG ACCTTCCGCC GCCGGGCGCG GGACTGGATC
CGGGCCAACC TCGCGCCGCT CCCGGCGGGC AGCGGGATCG GCGTGATGCG CGCGGGTGCC
AGCGACGAGG CGGAGCTCGC CGCGGTCGCG CGCCAGCGCG AGATCCAGCG GATGTTCTTC
GACGCGGGTT TCGCCGGGAT CGCCTTCCCC CGTGAATACG GCGGCCAGGG GCTCACCCCG
GACCACCAGC GGGCCTTCAG CGAGGAGATC TCGGGCTACG AGTATCCCGC GGACATCCAG
GCGCCGACCT TCTCTCCGTG CGCCGCGGTG CTGCTCGACT TCGGCACCGA GGAGCAGAAG
CGCCAGCACA TCCCGGCCAT TCTGAAGGGC GAGGAGCTGT GGATGCAGTT CCTGTCCGAG
CCGAGCGCCG GTTCGGACGT CGCCGCCGCG CTGACCAGTG CCGTCCGCGA CGGTGACGAC
TGGATCCTGA ACGGGTCCAA GATCTGGACG ACCGGCGCCT GGTGGTCGGA CTGGGGCCTC
GTCCTGGCCC GGACGAACTG GGACGTCCCG AAGCACCGCG GGCTGACCGT GTTCATCCTG
CCGATTCACC AGCCGGGTAT CGAGGTGCAC CGCATCGAGA TGCTGAACGG CAACAAGGAG
TTCTGCCAGG AGTTCCTCAC CGACGTGCGG GTCCCGGACT CCGACCGCAT CGGCGAGGTC
GACGACGGCT GGACGGTCGG CACGCGGTGG ATGTTCCACG AGCGGATGCT GCACAACTCG
CCGCTCGTCA CCATTCCCGC CGACGGGGCG CGCGGCACGA TCCGCGCCAC CCACCTGGTG
GAGATCGCGC GCGACGCCGG CCGGCTCGAC GACCCGTTGG CGCGCGACCT CATCGGTGAG
GGCCGCATGC TCGACCTCGT CACGCACGCG CTGCAGGGGC GGCTGTCCCG CGGCCTGCGG
TCCGGCCGGA TGCCCGACCA GTCGGCGGCC ATCGGACGGC TGTTCACCGG TGTGACGGCC
GCGCGGACCA CGACCCTGTC GTTCAACCTG GCCGGCGGGG CGAGCGCGGC CTGGACGGAC
GACGACGGCG CCACCGCCGA GTGCGGCAAC GACTTCCTGC TGCGGCAGGT GAGCTGCATC
GGCGGCGGCA CCACCGAGAT GGCCCGCAAC GTTGTCAGCG AGCGGGTGCT CGGCATGCCC
CGCGAGCCGG CGAAGGACCG CGGGGTGGCC TTCCGGGACG TCCCGCGGGG CGCCTCGAAC
CGGGGCTGA
|
|---|
| Protein sequence | MSTGDIEDVE TFRRRARDWI RANLAPLPAG SGIGVMRAGA SDEAELAAVA RQREIQRMFF
DAGFAGIAFP REYGGQGLTP DHQRAFSEEI SGYEYPADIQ APTFSPCAAV LLDFGTEEQK
RQHIPAILKG EELWMQFLSE PSAGSDVAAA LTSAVRDGDD WILNGSKIWT TGAWWSDWGL
VLARTNWDVP KHRGLTVFIL PIHQPGIEVH RIEMLNGNKE FCQEFLTDVR VPDSDRIGEV
DDGWTVGTRW MFHERMLHNS PLVTIPADGA RGTIRATHLV EIARDAGRLD DPLARDLIGE
GRMLDLVTHA LQGRLSRGLR SGRMPDQSAA IGRLFTGVTA ARTTTLSFNL AGGASAAWTD
DDGATAECGN DFLLRQVSCI GGGTTEMARN VVSERVLGMP REPAKDRGVA FRDVPRGASN
RG
|
|---|
| |