| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1588 |
|---|
| Symbol | |
|---|
| ID | 5669991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1897869 |
|---|
| End bp | 1899041 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641240507 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001505933 |
|---|
| Protein GI | 158313425 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2856] Predicted Zn peptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.266201 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0715353 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCAGCA TCCCCGAACG CCCGACTTCG TCCGGGCACA CGACTTCGTC CGGGCAGGCG
GCCTCCCCCG GGCACGCCAC CGTTCCCGAG CGGGTCGCCG GGCTGATCGA GGCGTCCGGG
CTGACCCGTC GCGATTTCGG GCTGCGCATC GGGCTCGACG AGTCGAAGAT GTCGAAGTCG
CTGCGCGGCA CCCGCCGCTT CTCCTCGACG GACCTGGCCC GCATCGCGCA GGTCTGCGAG
GTCACCGTCG ACTGGCTCCT CACCGGCGAC GAGCCGGCCC TCGCGCTCGC TGCCAGAACG
GCGGGCGGTG ACGCGGGCGG CGCGCTCGCC GCGGCCAGGC GCCTGGGCAC GATGCGCGCC
GACCTCGCCG ATCTCGGCTA CCCGGCGCCC TGGCAGGGGC CCCGGCTGGA GCACGTCCCC
GTCGGCTGGT CCGAGCAGGG CCGGCGGCTG GCCGGGCGCG CGCTCGACGA GGTCGACAAG
GCGGGCCGGT CGGTGCTGGA GGAGGACCTG ATCAGCGTGA TCGAGGCCGT CTTCGGCGTC
GACATCGCCG TCGCCGACCT CGGCCCGGGC ATCGACGGCC TGGCCGCGGC CTCCGCCGAG
GTGGCGCTGA TCCTGCTGGC GACGTCCCTG GTACCGGCCC GCCAGCGGTT CACCCTCGCC
CACGAGCTCG GCCACCTGCT CGCCGGCGAC GACCAGGACG TCCACCTCGA CCGGGACATC
TTCGACCCCG CCCAGGCGAG GGATCCCAGT GAGATCCGCG CGAACGCGTT CGCCTCGGCG
TTCCTGATGC CGGCCGACGC CCTCGGCGAC GCGGTGGATC CGGCCGGCAT CACCGACAGC
TGTTTCGCCG CCCTCGCCTG TGACCTGATG GTGACCCCGT CAGCGCTGGC GTACCGGCTG
CGCAACCTAC AGATGATCGA CTCGGCCATG TGTGACCGGC TGAAGCGGAT GACGGGGCCG
AAGGCTGCCC ACCTGGCCGG CCGCAGCGAC CAGTTCGCCC GGCGGGCCGC GGTCGCCGGC
ACCCCGCGGC CACCCGGGCT CATGCTCAGG GACACCTACG CCGCCTACGA AACCGGCGTG
ACAACCCTGC GCCCCTATGC CAACCTGCTC GGCGTAGACG TCGATGATCT CAGCGCCGCA
CTCGAAGCGG ACCGCCCGGC GCCCGGGGAG TAG
|
|---|
| Protein sequence | MPSIPERPTS SGHTTSSGQA ASPGHATVPE RVAGLIEASG LTRRDFGLRI GLDESKMSKS
LRGTRRFSST DLARIAQVCE VTVDWLLTGD EPALALAART AGGDAGGALA AARRLGTMRA
DLADLGYPAP WQGPRLEHVP VGWSEQGRRL AGRALDEVDK AGRSVLEEDL ISVIEAVFGV
DIAVADLGPG IDGLAAASAE VALILLATSL VPARQRFTLA HELGHLLAGD DQDVHLDRDI
FDPAQARDPS EIRANAFASA FLMPADALGD AVDPAGITDS CFAALACDLM VTPSALAYRL
RNLQMIDSAM CDRLKRMTGP KAAHLAGRSD QFARRAAVAG TPRPPGLMLR DTYAAYETGV
TTLRPYANLL GVDVDDLSAA LEADRPAPGE
|
|---|
| |