| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1175 |
|---|
| Symbol | |
|---|
| ID | 5669588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1399575 |
|---|
| End bp | 1400030 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641240107 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_001505535 |
|---|
| Protein GI | 158313027 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0400003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.116484 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATCT CCGCCCGGGC CGACTACGCA CTGCGGGCCC TGCTCACGCT CGCCGCGTCG
GACGGCAGCC TCGTGAAGGG GGAGACGCTC GCCTCGGCCC AGGATCTTCC CCTGCGCTTC
CTCGAGAACA TCCTCACCGA CCTGCGCCGC AGCGGCCTCG TGCAGAGCCG CCGCGGCGCC
GACGGCGGCT ACCAGCTGTG CCGCCCAGCC GAGGAGATCA CGATCGCGAC CGTGATCCGG
GCGACCGACG GCCCGCTCGC CAGCGTGCGC GGCCGCCCTC CGGAGAACGC CCAGTACGAG
GGCGCGGCCA AGCACCTGCA GGACGTCTGG ATCGCCGTCC GGGTCAACCT GCGCCGGGTG
CTCGAGTCGG TGACCCTCGC GGACGTCGCC AGCGGGAAGC TGCCCGACAT CGTCCGTGAC
CTGAGGGACG AGCCCGACGC CTGGGTCACC CGATAG
|
|---|
| Protein sequence | MQISARADYA LRALLTLAAS DGSLVKGETL ASAQDLPLRF LENILTDLRR SGLVQSRRGA
DGGYQLCRPA EEITIATVIR ATDGPLASVR GRPPENAQYE GAAKHLQDVW IAVRVNLRRV
LESVTLADVA SGKLPDIVRD LRDEPDAWVT R
|
|---|
| |