| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1051 |
|---|
| Symbol | |
|---|
| ID | 5669465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1233736 |
|---|
| End bp | 1235454 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641239980 |
|---|
| Product | trehalose synthase |
|---|
| Protein accession | YP_001505413 |
|---|
| Protein GI | 158312905 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | [TIGR02456] trehalose synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.828904 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.512672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACGAGT CGGAACCGTT CGCGGAGCAG CCGCTGCGCG AGACCGCGGC CGAGGGCGGC
GACACGGGGA CGTCCCAGGA CCCGCTGTGG TTCAAGCGGG CCGTGTTCTA CGAGGTCCTC
GTCCGCGGCT TCGCCGACTC CAACGGCGAC GGCACCGGTG ACCTGGCCGG GCTGGTCTCG
AAACTGGACT ACCTCGAGTG GCTCGGCGTG GACTGCCTGT GGCTGCTGCC CATCTACTCC
TCGCCGCTGC GCGACGGCGG GTACGACATC AGCGACTACT TCCAGATCCT CCCCGAGTTC
GGGGACCTGG GCGACTTCAT CAACCTCGTC GACGAGGCGC ACCGGCGCGG GCTACGGATC
ATCGCCGACC TGGTGATGAA CCACACCTCC GACGAGCACC CGTGGTTCCA GGCGTCGCGC
TCGGACCCGG ACGGGCCGTA CGGCGACTTC TACGTCTGGT CCGACACCGA CGAGAAGTAC
CCCGACGCCC GGATCATCTT CGTCGACACC GAGAAGTCGA ACTGGACCTG GGACCCGGTG
CGCGGGCAGT ACTACTGGCA CCGGTTCTTC TCCCACCAGC CCGACCTCAA CTACGACAAC
CCGGACGTCC AGGAGGCGAT GCTGGAGGTC CTGCGCTTCT GGCTCGACCT CGGCCTCGAC
GGGTTCCGCC TGGACGCCGT TCCCTACCTG TACGTGCGCG AGGGCACGAA CGGGGAGAAC
CTGCCGGAGA CGCACGAGTA CCTGCGCCGG GTCCGCAAGG AGATCGACGC CAAGTACGCC
GACAGGGTCA TGCTGGCCGA GGCGAACCAG TGGCCCTCGG ACGTCGTCCA GTACTTCGGC
AATGACGACG AGTGCCACAT GGCCTTCCAC TTCCCGCTGA TGCCGCGCAT CTTCATGGCG
GTGCGGCGGG AGTCGCGCTA CCCGATCTCG GAGATCCTGG CGCAGACCCC GGAGATCCCG
CCGAACTGCC AGTGGGGCAT CTTCCTGCGC AACCACGACG AGCTGACCCT GGAGATGGTC
ACCGACGAGG AGCGGGACTA CATGTACGCC GAGTACGCGA AGGACCCGCG TATGAAGGCG
AACATCGGGA TCCGCCGACG CCTCGCCCCG CTGCTGGACA ACAGCCGCGA CCAGATGGAG
CTGTTTACCG CCCTGCTGCT CTCCCTGCCC GGCAGTCCCG TGCTCTACTA CGGCGACGAG
ATCGGTATGG GCGACAACAT CTATCTCGGT GACCGCGACG GCGTGCGCAC CCCGATGCAG
TGGTCCCCGG ACCGCAACGC CGGGTTCTCG ACAACCGACC CGGCCCGGCT GTACCTGCCG
GTGATCATGG ACCCGGTGTA CGGCTACCAG GCGCTGAACG TCGAGGCCGA GCAGCGGATG
CCGACGTCGT TCCTGTCTTG GACCAGGCGG ATGATCGAGG TCCGCAAGCG GCATCCCGTC
TTCGGGCTCG GCACCTACGA GGAGCTCGGC GCGTCGAATC CGTCGGTCTT CGCGTATGTC
CGGGAGTTCG GTGACGACAG GGTGCTCTGC GTCGCGAACC TCTCCCGGTT CGCCCAGCCC
GTCGAGCTTG ACCTGCGGAG ATTCGCCGGC CTGGTGCCGG TGGAGCTGCT CGGCCGGGTC
CATTTCCCAC CGGTCGGCGA GCTTCCGTAC CTGCTGACAC TGCCCGGTCA CGGACACTAC
TGGTTCGCTC TGTCCAATCC GGGGGAATTC ACTCAGTAG
|
|---|
| Protein sequence | MNESEPFAEQ PLRETAAEGG DTGTSQDPLW FKRAVFYEVL VRGFADSNGD GTGDLAGLVS
KLDYLEWLGV DCLWLLPIYS SPLRDGGYDI SDYFQILPEF GDLGDFINLV DEAHRRGLRI
IADLVMNHTS DEHPWFQASR SDPDGPYGDF YVWSDTDEKY PDARIIFVDT EKSNWTWDPV
RGQYYWHRFF SHQPDLNYDN PDVQEAMLEV LRFWLDLGLD GFRLDAVPYL YVREGTNGEN
LPETHEYLRR VRKEIDAKYA DRVMLAEANQ WPSDVVQYFG NDDECHMAFH FPLMPRIFMA
VRRESRYPIS EILAQTPEIP PNCQWGIFLR NHDELTLEMV TDEERDYMYA EYAKDPRMKA
NIGIRRRLAP LLDNSRDQME LFTALLLSLP GSPVLYYGDE IGMGDNIYLG DRDGVRTPMQ
WSPDRNAGFS TTDPARLYLP VIMDPVYGYQ ALNVEAEQRM PTSFLSWTRR MIEVRKRHPV
FGLGTYEELG ASNPSVFAYV REFGDDRVLC VANLSRFAQP VELDLRRFAG LVPVELLGRV
HFPPVGELPY LLTLPGHGHY WFALSNPGEF TQ
|
|---|
| |