| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0996 |
|---|
| Symbol | |
|---|
| ID | 5669410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1174622 |
|---|
| End bp | 1177111 |
|---|
| Gene Length | 2490 bp |
|---|
| Protein Length | 829 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641239924 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001505358 |
|---|
| Protein GI | 158312850 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.846195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTGC TGCTCGCGGC CGTGCTGTTC GTGGCAGTCA CGATCACCGG GACGCGGGGA
AGTGAACCCG CCGTCGTCGC GCTGCGGTCC TTCGTCACGC TCGTCTCGGG GCTGCTGTGC
ATCCTGCGTG CCGTCCTGCT GCGCGGTGAG CGGCTGCCCT GGGCGTTGTT CGGCGCGGGG
ATCATCAGCT ACGGCGCGGC CAGCGTCTAC TTCAGTCTCG CGGTCAGCGG CCCGGCCGAG
GGGGCGGCGG TCGAGGTGTC GGCGGCGGAC GTCGGCTGGC TGCTTTTCTA TCCGGCCTGT
TACGTGGCCG TCATCCTGCT GCTGCGCCAG CGGGTGCTGC GGTTCCACGC GAGCGTGTGG
CTCGACGCGC TGGTCGGTGT GCTCGGGGTG GCCGCGCTCA GCAGCGGCAT CGGCGCGCGC
CTCACCACGG ACGGCCCCGC GGACATCTCC TCCATCGTGG TCGGCCTGGT GTACCCGCTC
GCCGACCTGC TCCTCGTCCT GCTGGTGGTG ACGGTCTTCG GGCTGCTGCG CTGGCATCCC
GGCCGGGTGT GGTGGCTGCT CGGCGGCGGG CTCGTCGGCT TCGCCCTCGC CGACTCGTGC
GTGTTCGTGC TGATGGCGGA CGGCGACTAC GCGCCGGGCG GCCTGCTGGA CATCGTCTGG
GTGCTCTCCC TGTTGGCCCC GGCGTTCGCC GCCTGGCAGC GCCAGCCCTG GCGGAAGCCC
GCGCGGATGT CCGGCTGGAG CGTGATCGCG GTACCGCTGG TGCTGACCGT CCTCGCGCTG
GCGCTGCTGG TCATCGGGTC CATGATGGAT CTTCCGCTGC TCACCGTGGC GCTCGCGGCG
GCGACGGTCC TCACCGCGCT GGCCCGGGCG GCGATGACCT TCGTCGAGGT CCAGCAGCTC
GCCGAGAGCA AGGTGCTCGC CCGCACCGAC GACCTCACCG GCCTGACGAA CCGGCGCGGG
TTCATCGAGC GCCTGTCCAC GCTCGAGGGG AACATCCCCG ACGGGGACTC GTTCGCGCTG
CTCCTACTCG ACCTCGACCG GTTCAAGGAG ATCAACGACT CGCTGGGCCA CCATGTGGGC
GACGCGCTGC TCGTCGAGGT CGGGTCCCGC ATCGCGGGGG CGCTGCGGCC CGGCGACCTG
CACGCCCGGC TCGGCGGGGA CGAGTTCGCC GTCCTGCTGG AGCACGCCGA CGCCGACACC
GCCCGGCGGG TGGCCGACCG CGTCCTGGTG GCGCTGTCCG GCGCCTTCGA GGTCGGCGGG
ATGACCCTGC ACGTCGGCGC GAGCATCGGC GCGGCGCTCT ACCCGGACCA CGCCGCCGAC
GCACAGACCC TGCTGCAGCG GGCCGACGTC GCCATGTACG GCGCGAAGTC CGGCCGGACC
GGGGTGGAGT ACTACCGCCC TGGCGCCGAG GTGAACACGC TGCTGCGGCT GGACATGATC
GAGTCGCTGC GCGCCGCGCT GGGCACCGGT CAGCTCGAGG TCCACTACCA GATCAAGGTC
GAGCTCGACT CGGGCAGGTC GCACGGCGTC GAGGCCCTCG TGCGGTGGCG TCATCCCACC
CGCGGCCTGC TGACGCCCGA GTCGTTCGTG CCGCTGGCCG AGCAGGCCGG CCTGATGCGG
ATGCTCACGA TCGAGGTGCT CGAGACCTCG CTCGCCCAGT GCCGGCGGTG GCGCGAGGCC
GGCCTGGAGG TCGCCGTCGC GGTGAACCTC TCCGCCTCCG ACCTGCTCGA CCGCGCGTTC
CCCGACCAGG TGCGCGGGCT GCTCGCCCAG TACGGGCTGC TGCCGTCCGC GCTCGAGCTG
GAGATCACCG AGACGACGCT GATGCTGGAC CGGGTACGCA CCGCGGCGGT GCTCGGCGAG
CTGCGCGAGC TCGGCGTGCA GATCGCCGTC GACGACTACG GCACGGGCTA CTCCTCGCTG
GCGTACCTCC AGGAGCTTCC GGTAGACATG CTGAAAATGG ACAAGTCGTT CGTGACGAGG
CTCGAGGACG GATCCGGGCT GCGCCGCGCG AAGGCGGAGG CGATCGTCCG GTCGACGGTC
GGACTCGCGC ACGCGCTGGG CCTGCGGATC GTGGTCGAGG GCGTGGAGAG CGCGAGCGCG
CTCGACAAGT TGCGGAACTA CGGCTGCGAC GTCGCCCAGG GCTACTTCCT GGGGCGCCCG
CGGCCCGCGG ACGAGGTCAC GGCGATGTTG TCGTCACCGG TCGTCCGGGC GGCGGTCGAC
GCGGCCGCCG CCGAGGCGAC GACTGAGGCC ACGACGACAG CGCAGGCGGC GGCGGAGGTG
GCGGCGGAGG TGGTCGATGT GTCCTCGGCG GAGGCTGCGG GCGAGGCGGT CGCGGTGGCC
CAGGCTGAAG CCCTTGCCCA GGCCGAGGCG GTCGCACAGG CGGAGGCTGC GGCCACGGCG
GAGGCCGCGG CCAGGATCGC GGCCGAGATC GACGATCACG ATGACGGCGG CACCGGCGCG
CGAACCCCCG CGGGCCAGCT GTGGGGCTGA
|
|---|
| Protein sequence | MLLLLAAVLF VAVTITGTRG SEPAVVALRS FVTLVSGLLC ILRAVLLRGE RLPWALFGAG
IISYGAASVY FSLAVSGPAE GAAVEVSAAD VGWLLFYPAC YVAVILLLRQ RVLRFHASVW
LDALVGVLGV AALSSGIGAR LTTDGPADIS SIVVGLVYPL ADLLLVLLVV TVFGLLRWHP
GRVWWLLGGG LVGFALADSC VFVLMADGDY APGGLLDIVW VLSLLAPAFA AWQRQPWRKP
ARMSGWSVIA VPLVLTVLAL ALLVIGSMMD LPLLTVALAA ATVLTALARA AMTFVEVQQL
AESKVLARTD DLTGLTNRRG FIERLSTLEG NIPDGDSFAL LLLDLDRFKE INDSLGHHVG
DALLVEVGSR IAGALRPGDL HARLGGDEFA VLLEHADADT ARRVADRVLV ALSGAFEVGG
MTLHVGASIG AALYPDHAAD AQTLLQRADV AMYGAKSGRT GVEYYRPGAE VNTLLRLDMI
ESLRAALGTG QLEVHYQIKV ELDSGRSHGV EALVRWRHPT RGLLTPESFV PLAEQAGLMR
MLTIEVLETS LAQCRRWREA GLEVAVAVNL SASDLLDRAF PDQVRGLLAQ YGLLPSALEL
EITETTLMLD RVRTAAVLGE LRELGVQIAV DDYGTGYSSL AYLQELPVDM LKMDKSFVTR
LEDGSGLRRA KAEAIVRSTV GLAHALGLRI VVEGVESASA LDKLRNYGCD VAQGYFLGRP
RPADEVTAML SSPVVRAAVD AAAAEATTEA TTTAQAAAEV AAEVVDVSSA EAAGEAVAVA
QAEALAQAEA VAQAEAAATA EAAARIAAEI DDHDDGGTGA RTPAGQLWG
|
|---|
| |