| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0974 |
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| Symbol | |
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| ID | 5669388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 1138756 |
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| End bp | 1139886 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641239902 |
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| Product | FliA/WhiG family RNA polymerase sigma factor |
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| Protein accession | YP_001505336 |
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| Protein GI | 158312828 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02980] RNA polymerase sigma-70 factor, sigma-B/F/G subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.279124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACTTCAG CCGGCAGAAC ACCCACCACC CCTCGTACGG TCCCCACGAA CCGCGCGGGC
GACCCGGTCG CGGCACTCAG CCAGCGCGGT GCCGGCGACA TCACCAGCAC CGACATCGCC
AGCACCGACA TCGCCAGCAC CGACATCGCC AGCGCTGACA TCGCCAGCGC TGACATCGCC
GGCCCCGACG TCGGCGGGAT CACCGGGACG GCGCACGAGG CCGACGGCCT GACCGAACGC
GGATCCGGGC CTGGTGCCGA GCACGGTGGT CCACCGCCCG CCTCAGCCGT GGGCGAGCAG
GCCCAGCCCG ACGAGGCCGT CGACGCTGCC GGTGCGGGCT CCCGCTCCGG CTCGTCCGGG
CACGGCGCCG GGTCGCCGGA TCGGATCCGG GCCCGCGCGC TGTTCGTCCG GCTGGTGTCG
CTGCCCGAGG GGGACCCGGA ACGGGCCGCC CTGCGTGACC AGCTCGTCCG CATGCACCTT
CCCCTCGTCG AGTACCTCGC CCGGCGGTTC CGAAACCGCG GCGAGCCGCT CGACGATCTG
GTGCAGGTCG CGACCATCGG GCTGATCAAA TCCGTCGACC GGTTCGACCC GGAGCGCGGG
GTCGAGTTCT CGACCTACGC GACCCCGACC ATCGTCGGGG AGATCAAACG GCACTTCCGC
GACAAGGGCT GGGCGATCCG GGTGCCCCGT CGGCTCCAGG AGCTCAAGCT CTCGCTGACG
AAGGCGACCT CCGAGCTGTC CCAGTCGCTG GGCCGCTCGC CGACGGTCAG CGAGATCGCC
CGTCACCTGG AGATGAGCGA GGAAGAGGTC CTCGAGGGCC TCGAGTCGGC GAACGCCTAC
TCGGCCGTCT CGCTGGACGC GCCCGACTCC GGGGACGACG AGGCTCCGGC CGTCGCCGAC
ACCCTGGGGG TGCAGGACGA GTCGCTGGAG GGCGTGGAGT ACCGCGAGTC CCTCAAGCCG
CTGTTGGAGA AGCTTCCCCC GCGGGAGAAG CGCATCCTGC TGCTCCGCTT CTTCGGCAAC
ATGACCCAGT CGCAGATCGC GAACGAGCTC GGCATCTCGC AGATGCACGT GTCCCGGCTG
TTGGCCCGCA CGCTGGCCCA GCTCCGCCGC GGGCTACTGG AAGACGGCTG A
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| Protein sequence | MTSAGRTPTT PRTVPTNRAG DPVAALSQRG AGDITSTDIA STDIASTDIA SADIASADIA
GPDVGGITGT AHEADGLTER GSGPGAEHGG PPPASAVGEQ AQPDEAVDAA GAGSRSGSSG
HGAGSPDRIR ARALFVRLVS LPEGDPERAA LRDQLVRMHL PLVEYLARRF RNRGEPLDDL
VQVATIGLIK SVDRFDPERG VEFSTYATPT IVGEIKRHFR DKGWAIRVPR RLQELKLSLT
KATSELSQSL GRSPTVSEIA RHLEMSEEEV LEGLESANAY SAVSLDAPDS GDDEAPAVAD
TLGVQDESLE GVEYRESLKP LLEKLPPREK RILLLRFFGN MTQSQIANEL GISQMHVSRL
LARTLAQLRR GLLEDG
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