Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_0730 |
Symbol | |
ID | 5669146 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 848472 |
End bp | 849200 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641239657 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001505094 |
Protein GI | 158312586 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00296779 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0851548 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACACCA CATCCGTCGA CCCGGCCAAG CCCCGCGGAG CCGGTGACCG ACCGGCCGCC AGCCGGGCCG GGCTGTCCCG TGAACGGATA GTGGCCGTGG CCCTGGAGAT CGCCGACGCC GAAGGACTCG ACGCGGTCTC GATGCGGCGC GTCGCCGCCA TGCTCGGCGT CGGCACGATG ACCCTCTACA CCCACGTCCA GGACAAGGAA GCACTGCTGG AACTGATGCT CGATGCGCTG ACCGCCGAGC ACCTCCTCGC CGGCACCGGC CCGGACTGGC GCACCGGCCT CACCCGGATC GCCCGCCTCA CCCGCCAGAG CCTGCTGCGC CATCCCTGGG CGCTGGCGCT CGGCCTGCGC CCCGCTCTCG GGCCGAACAA GCTGCGGCAC ATCGAGCAGT CCCTCGCCGT CGCGTCCGGG CTCACCACCG ACCCGGCGGC CCAGCGAACG ATCGTGCACG CGGTCGACGA CCTGGTCGTC GGTTGCGCGA TGCGGGAGCT CGCGGCGCGG GCCATCGAGG CCGACGTCCC GCGCCCGTTG TGCGGGCTGC GGCGCCGCAT CGACGCCGAG CCCACCCTGC GGGAGCTGCT CCACAGCGGG GAGTTCCCAC ACCTGGCCCG GATGCTCGCC GGGGACGCCC CCTTCGCCTC CGAGCGGTTC GAGCAGGCCC TGACCTGGCT GCTCGACGGC ATCGAGCGGA CGTACCGCCC CGATTCCCCC ACAGCCTGA
|
Protein sequence | MNTTSVDPAK PRGAGDRPAA SRAGLSRERI VAVALEIADA EGLDAVSMRR VAAMLGVGTM TLYTHVQDKE ALLELMLDAL TAEHLLAGTG PDWRTGLTRI ARLTRQSLLR HPWALALGLR PALGPNKLRH IEQSLAVASG LTTDPAAQRT IVHAVDDLVV GCAMRELAAR AIEADVPRPL CGLRRRIDAE PTLRELLHSG EFPHLARMLA GDAPFASERF EQALTWLLDG IERTYRPDSP TA
|
| |