Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_0548 |
Symbol | |
ID | 5668965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 634760 |
End bp | 636262 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641239475 |
Product | major facilitator transporter |
Protein accession | YP_001504913 |
Protein GI | 158312405 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTAATT CACCGACTCG GTCGCCAGCG CGGTCGGGAG GCAGGCTCGC ACTAATCGCG TTTGCCCAGC TCATCATCGC ACTTGACTAC AACATCGTGT ACGTGGCGCT GCCCGAGATC GGCGCCGACC TCGACTTCTC GGCCCAGTCG CTGCAATGGG TGGTGAGTGC CTACGCCGTC GGCTTCGGTG GCCTGCTCCT GTTCGGCGGC CGCGCGGTCG ACCGGCTCGG GGCACGCCGG ATCTTCCTGG TCGCCGTCGC CATCTACGGC GTCTCGTCCC TCGCCGGCGG GCTCGCCCCC GAACCTGGGC TGCTCGTGGC CGCGCGTGCC CTGCAGGGCA TCGGCGGAGC GCTGCTCTTT CCCGCCATCC TCACGCTGAT CTACAGCGGC TTCGTCGAGG GAGCCGAGCG CAACCGCGCC CTGGCCGTCT GGGGCGCCGT CGGCAGCGGC GGCCTCGCCG CCGGCTCCCT GCTCGGCGGT CTGTTCACCG ACTGGTGGGG CTGGGAGTCC GTCCTCTTCG TCAACGTCCC GCTCGCGCTG ATCGCCCTGC TGGCCGCGCC GCGACTGCTG CCGGCCGACG CGCCTGTCAA GCGCGGCGTC AAGGCGTTCG ATGTGCCCGG CGCACTGCTT GCCACCGCAG GCTCCTCGCT CATCGTCTTC GGCCTGGCCA GCGGCCCGGA GTCCGGTTGG ACCTCGGTCC GTGCGCTGGG CACCATTGTG ATCGGCGGCG TGCTCCTCGT CGCCCTGCTG GTGACCGAAG CCCGCACCCC GGATGGGCTC CTCCCGCTGC GGCTGGTGCG CACCCGCACC CTGGCCACGA CCATGGCGGT CGCCTTCCTC TTCATGGGCA CCCTCGCCAC CGGCTATTAC GTGCTCACCA CCTACCTCCA GCCCGTCCTC GGCTACAGTC CGACGGAGGC GGGCCTGGCA TTCCTTCCCG TCTGCGTGTT CTCCATGATC GGAGGACCAG TGACGGCCGT CCTGCTCAAC AGATTCGGCA TCCGCGCCAC TCTGGCCGGG GCTCTGATGA CCAACGGCGG CGGCGTGGCC CTCGTCTGCG TGGTCATGGC TGTGGATGGC TCGTTCTGGT CGATGCTGCC CGGCATGGTC CTGTGGGGCC TGGGCGGCGG CGTCGGCTTC ACCGCCACCT TCGCGGCGGC CGGCATGGGT GTCGCGCCGA TGGAACAGGG CGTCGCCTCG GCGGTGGCCT CCACCTCCCA GCAGATCGGC GGCGCCGTGG GCCTGGCCGC CCTGATCGCG GTCGCCAACC ACGGCCTCGA CTACAACGCG GTCCCCGGGC CCACGCTGGA CGAGATCGTT GACGGCCTCC GGTGGGCCGG CGTCCTCGCC GGCGCTCTCT CGGTCGTCGG CGGCTTCGTC GCCCTGATCC TCAAGAGCGG CAAGGCCACC GCTGCCGCAG TCGGGGAAGA ACCTGCTGGG GATGAAGATG AACAGGTGAC CGCAAGCGGC ACCGCCGACG AAGCGATCGT CACCGCCCAG TAA
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Protein sequence | MTNSPTRSPA RSGGRLALIA FAQLIIALDY NIVYVALPEI GADLDFSAQS LQWVVSAYAV GFGGLLLFGG RAVDRLGARR IFLVAVAIYG VSSLAGGLAP EPGLLVAARA LQGIGGALLF PAILTLIYSG FVEGAERNRA LAVWGAVGSG GLAAGSLLGG LFTDWWGWES VLFVNVPLAL IALLAAPRLL PADAPVKRGV KAFDVPGALL ATAGSSLIVF GLASGPESGW TSVRALGTIV IGGVLLVALL VTEARTPDGL LPLRLVRTRT LATTMAVAFL FMGTLATGYY VLTTYLQPVL GYSPTEAGLA FLPVCVFSMI GGPVTAVLLN RFGIRATLAG ALMTNGGGVA LVCVVMAVDG SFWSMLPGMV LWGLGGGVGF TATFAAAGMG VAPMEQGVAS AVASTSQQIG GAVGLAALIA VANHGLDYNA VPGPTLDEIV DGLRWAGVLA GALSVVGGFV ALILKSGKAT AAAVGEEPAG DEDEQVTASG TADEAIVTAQ
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