| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0485 |
|---|
| Symbol | |
|---|
| ID | 5668905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 569226 |
|---|
| End bp | 570305 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641239415 |
|---|
| Product | integrase catalytic region |
|---|
| Protein accession | YP_001504853 |
|---|
| Protein GI | 158312345 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.444951 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGTCC ACTGTGTCCG TACGCCTGCT GTATCTGATC TTCGTGCGGG TCTGCGGCTG
GCTGGTCCTC CTCGGTCGTT CGTCGGCGTC CAAGGACATC GAGCTGCTGG TGTTGCGGCA
CGAGGTCACC ATGCTGCGCC GTACCCAGCC CAAGCCCCGG TGGGACTGGG CGGACCGGGC
GGTACTCGCC GCACTGATCC AGCTTTTGCC GAAGACACTG CGAGCGCACC GACTGGCCAC
CCCCGGCACC GTCCTACGGT GGCACCGCCG TCTAATCACA CGGAAATGGA CCTACCCGCA
CCGGACAGGA CGACCGCCGG TCAGCACGGA GATCGCGACC CTCATCGAGC GGCTCGCGAC
CGAGAACACG ACGTGGGGAT ACCAGCGGAC CCAGGGCGAG CTCCTCACAC TCGGCCACCG
CATTGGCGCG TCCACGATCG CCGGGTCCTG ACGTCCCTGG GGCTGCCCCC GGCACCGAAA
CACCAGACCG ACACGACGTG GCGGCAGTTC CTGCGCACCC AGGCATCGAC GATGCTGGCG
GTCGACTTCT TCCACGTGGA CTGCGCCGTG ACGCTGCGGC GTCTGTACTG CTTCTTCGTC
CTGGAAGCCG GCTCCCGCTC CGTCCACATC CTCGGGGTCA CCGCCCACCC GGACGGGCTG
TGGACCACCC AACAGATCCG CAACCTCCTC ATGGACCTCG GCGCCCGGAC AGCCGACTTC
CAGTTCCTGA TCCGCGACCG CGCCGGGCAG TTCACCGCGT CCTTCGACGC GGTCCTCGCC
GACGCCGGCA TCACCACCGT CAAGATCCCA CCCCGGACGC CCCGGGCGAA CGCCTACGCC
GAACGGTTCG TCCACACAGT CCGGACCGAG GTCACCGACC ACATGCTGAT CGTCGGTGAA
CGGCACCTAC GTTCTGTCCT GGCCGAGTAC GCCGCCCACT ACAACGGACG ACGACCCCAC
CGCAGCCGCG ACCTTCAACC ACCACGACCC GACCACCCCA TCGCCGACCT GACCAAGGAA
CGGATCAAGC GCCGCCCCGT CCTCGACGGC CTGATCAACG AATACGAACG AGCCACCTAA
|
|---|
| Protein sequence | MMVHCVRTPA VSDLRAGLRL AGPPRSFVGV QGHRAAGVAA RGHHAAPYPA QAPVGLGGPG
GTRRTDPAFA EDTASAPTGH PRHRPTVAPP SNHTEMDLPA PDRTTAGQHG DRDPHRAARD
REHDVGIPAD PGRAPHTRPP HWRVHDRRVL TSLGLPPAPK HQTDTTWRQF LRTQASTMLA
VDFFHVDCAV TLRRLYCFFV LEAGSRSVHI LGVTAHPDGL WTTQQIRNLL MDLGARTADF
QFLIRDRAGQ FTASFDAVLA DAGITTVKIP PRTPRANAYA ERFVHTVRTE VTDHMLIVGE
RHLRSVLAEY AAHYNGRRPH RSRDLQPPRP DHPIADLTKE RIKRRPVLDG LINEYERAT
|
|---|
| |