Gene Franean1_0023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_0023 
Symbol 
ID5668450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp28203 
End bp29546 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content69% 
IMG OID641238952 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_001504398 
Protein GI158311890 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.222017 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTCGA GCCTGTCCAC ACCGATGAGC TCACGGAGAA GTCGTGAACA GTGGCGAGGC 
CAACGCGGTG GTGATCCCGG CCGCCGACGA CCACGATGCG CCCGCGTCCC CGCCGGCCGT
ATCCGCCGCA CCCTCGCACC CGCCATCGAG TTCGTCGGTG TCGCGAAGGA ATACAGCTCG
CGCGCCGGTC TGGTGGGTGC GGTCTCGCGG GTGGATCTCA GCATCGAGCA GGGCGAGTTC
TTCTCACTGC TCGGCCCGTC CGGCTGCGGC AAGACCACCA CCCTGAGGAT GATCGCCGGA
TTCGAGGAAC CGACCCGCGG GCGCATCCTG CTCCACGGCC GCGACGTCAC CGCCGTCCCG
CCCAATCGGC GCGATGTGAA CCTCGTCTTC CAGAGCTACG CGCTCTTCCC ACACCTGGAT
GTCGCCTCGA ACGTGGCCTT CGGGCTGCGG CGCCGCGGGG TCCGCGGCCA GGAGCTGCGC
AGGCGGGTCG GCGAGATACT CGAGCTCGTC GAGCTGTCCG GGCTCGCCGA CCGGCGGCCC
CGGGCGCTCT CCGGCGGCCA GCAGCAACGG GTCGCGCTCG CCAGGGCGCT GGTTAACCGG
CCGCGGGCCC TGCTGCTGGA CGAACCGCTC GGAGCCCTCG ACCTGAAACT GCGCCAGACG
ATGCAGATCG AGCTCAAGCG AATACAGCGC GAGGTCGGCA TCACGTTCGT GTACGTGACA
CACGACCAGA GCGAGGCGCT CACGATGTCG GACCGGATAG CGGTGATGAA CAGGGGCCGC
GTCGAGCAGC TCGCCGCCCC CCGGGAGATC TACGAAAGGC CTGGAACCCG GTTCGTGGCC
GGATTCATCG GCACGTCGAA CCTGCTGCGC CGATCGGTGC GGTCCGTCGA TCCGGCCGGC
GTGGACGGAA CTCCGGTGGC GGTTCTCGAC TCCGCCGCCG AAGAACGCCT GGTGGTTCCG
CTCCGGCCGG AGCTCGGCCG GCCAGCGACC GGATCCGAGT TGGAGATGAC CGTCCGGCCG
GAGAAAATCA CCCTGGGTGT GACGCGCCCC AACGGAACGT GCTGTGCGCT GCACGGTCGG
GTCACCGAGG TCGTCTATCT GGGCACGTAC ACGACATACA CGGTGTTGAC GCACGGTGGA
TCCGAGATCA CGGTTTTCTG GCAGAACAGC GCCGACGCGA CGAACATCGC AGACCGGGGC
GACGAGGTGT GGCTGTCGTG GCTGCCGACG CATTCCTTCG CCCTCGCACC GAGCGCCCAC
GCAAAGAGCA CCCCGCCGAG CGCCCTTGCA CCGAGCGGCT CCCTGCGGGA AGACCAGAAC
CACACGGAGG GACTCGCATC GTGA
 
Protein sequence
MPSSLSTPMS SRRSREQWRG QRGGDPGRRR PRCARVPAGR IRRTLAPAIE FVGVAKEYSS 
RAGLVGAVSR VDLSIEQGEF FSLLGPSGCG KTTTLRMIAG FEEPTRGRIL LHGRDVTAVP
PNRRDVNLVF QSYALFPHLD VASNVAFGLR RRGVRGQELR RRVGEILELV ELSGLADRRP
RALSGGQQQR VALARALVNR PRALLLDEPL GALDLKLRQT MQIELKRIQR EVGITFVYVT
HDQSEALTMS DRIAVMNRGR VEQLAAPREI YERPGTRFVA GFIGTSNLLR RSVRSVDPAG
VDGTPVAVLD SAAEERLVVP LRPELGRPAT GSELEMTVRP EKITLGVTRP NGTCCALHGR
VTEVVYLGTY TTYTVLTHGG SEITVFWQNS ADATNIADRG DEVWLSWLPT HSFALAPSAH
AKSTPPSALA PSGSLREDQN HTEGLAS