Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_4394 |
Symbol | |
ID | 3907368 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 5251234 |
End bp | 5252082 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 637881725 |
Product | HAD family hydrolase |
Protein accession | YP_483469 |
Protein GI | 86743069 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1877] Trehalose-6-phosphatase |
TIGRFAM ID | [TIGR00685] trehalose-phosphatase [TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.553746 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGAAT CCGCGCCGAA CAGCCCACCC GCCCCCCGCA CACCCGCCGG GGGCGCTGGA CTCGCCGCCC TGCTCACCGC GCCCGAACGC GCCCTGATCG CCCTCGACTA CGACGGCACC CTCGCGCCGA TCGTCCCGCG GCCGTCGGAC GCCGTCCCGG CGCCGGGGGC GATGGATGCG CTGCGCCGGA TCTCCCATGA GATCGGCACC CTCGCCATCA TCACCGGACG GCCGGTGGAC TCTCTGCTGG AACTGACCGG GCTGGAGAAG ATCCCCGACT TCGGGAACCT GATCATCCTT GGCCAGTACG GACTGCAACG CTGGGACTCG GGCAGCCGCG CGATCAGCAG TCCCGAGCCG CTGCCCGGTG TCGCCGCGGT CCGCGCGGCG CTGCCCGAAC TGCTCCGCGA CGCCCCGGTC GGCACCGCCG TCGAGGACAA GCACCAGGCG CTGGTGGTAC ACGTGCGGCG CACCGCCGAT CCGGACTCGG CGCTCGCCGC GCTCACGCCG GCGTTGACGG CCCTCGCCGA AGACCATGGG ATGGAGGCGG CACCGGGCAA GCGAGTGCTG GAGCTGCGTC CGCCCGGGCA CGACAAGGGC GGTGCGCTGC GCAGGCTCAT CGCGGCCTGC CAGGCGCGCT CGGTGCTGGT CGCCGGGGAC GACTACGGCG ATCTGCCGGC ATTCGAGGCC GTCGACGAGC TACGGGCGGG CGGGCTGCCC GGTATCACCG TGTGCAGCGA CAGCCCGGAG GTCCCGGACG TGATCCGCGA ACGCGCCGAC CTGGTCGTGG GCGGGCCCCC CGGGATGGTC GCCCTGCTGG AGGTGCTGGT CGAGCGGCTC AGCGGCTGA
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Protein sequence | MTESAPNSPP APRTPAGGAG LAALLTAPER ALIALDYDGT LAPIVPRPSD AVPAPGAMDA LRRISHEIGT LAIITGRPVD SLLELTGLEK IPDFGNLIIL GQYGLQRWDS GSRAISSPEP LPGVAAVRAA LPELLRDAPV GTAVEDKHQA LVVHVRRTAD PDSALAALTP ALTALAEDHG MEAAPGKRVL ELRPPGHDKG GALRRLIAAC QARSVLVAGD DYGDLPAFEA VDELRAGGLP GITVCSDSPE VPDVIRERAD LVVGGPPGMV ALLEVLVERL SG
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