Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_4188 |
Symbol | |
ID | 3907153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 4999976 |
End bp | 5000635 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 637881516 |
Product | isopentenyl-diphosphate delta-isomerase |
Protein accession | YP_483265 |
Protein GI | 86742865 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1443] Isopentenyldiphosphate isomerase |
TIGRFAM ID | [TIGR02150] isopentenyl-diphosphate delta-isomerase, type 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCCCGC AAGGATCCGA CTCCGACGTC GTGACGGTGC CGCGTGACGC GGCGTCACCA CAGACGGTGT CGCGTGACAC CGCGTCGGTC CCGCCCGCCG ACGAGGTCGT GCTCCTCGAC GCCGAACGCC GCCCCTGCGG GACGGCGCCG CGGATCGCCG TGCACGGCCT CGACACCCCC CTGCACCTGG CGTTCTCGTC CTACCTTTTC GACCCGTCCG GCAGGCTGCT CGTCACCCGC CGGGCGCTCG ACAAGCGGAC CTGGCCGGGG GTGTGGACGA ACAGCTGCTG TGGGCATCCC CGCCCAGGCG AGGATCTGGC GCGGGCCGTC GAGCGCCGGG TAGGCCAGGA ACTCCGCCTG GAGTTGACCG ACCTGCACTG CGCGCTGCCG GACTTCGCCT ACCGCGCCAC CGCCGCCGAC GGTCTCGTGG AGAACGAGGT CTGCCCGGTC TACGTGGCGC GGGCGCTCGG GGACCCGGAT CCGGACCCGG CCGAGGTGGT CGAGTGGCGC TGGGTCGAGT GGGACGACTA CCGCCGGGTG GCCGCCGCCG CGCCCTGGGC GCTAAGCCCC TGGTCGGTCG ACCAGATGGC GGCGTTCAGC GCGGCGGCCC ATCCGCTGAC CGCCGCGCTC TCCCTCGTCT CCGGCGGAAC CCACGCCTGA
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Protein sequence | MSPQGSDSDV VTVPRDAASP QTVSRDTASV PPADEVVLLD AERRPCGTAP RIAVHGLDTP LHLAFSSYLF DPSGRLLVTR RALDKRTWPG VWTNSCCGHP RPGEDLARAV ERRVGQELRL ELTDLHCALP DFAYRATAAD GLVENEVCPV YVARALGDPD PDPAEVVEWR WVEWDDYRRV AAAAPWALSP WSVDQMAAFS AAAHPLTAAL SLVSGGTHA
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