| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4055 |
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| Symbol | |
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| ID | 3907016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 4847427 |
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| End bp | 4849091 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637881384 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_483134 |
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| Protein GI | 86742734 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.505018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCGATC TCGCGTTGGC CGCCCTCGAC GATGGCCGCC GGATCCGCGG CGGCCCGCTG
CCCGCCGGTG GTCCACCGGT GGTGCGCGCC ATGACCAGAG CTGCCCTCGG CCTGACTCCG
GCCGATCCGG CCCCGGCCGA TCCGGCCCCC CCGGACAGTA CAGGGACCCT GCTACCGAGG
ACCGGAATCG GCCCGTCGGC CGCGCTGACC GGCCTGGTCG AAGCCCTGGC CGCCGGTTCC
GCGGACCCGG CGGACCCGTG GTGCGCCGCC CATTTGCACT GCCCTCCGCT GGCGGTCGCG
GTCGCCGCCG ACCTCGCCGT GAGCGCCCTC AATCCGTCCC TGGACTCCTG GGACCAGGCT
CCCGCGGCCA CGACGATCGA GACCGAGGTC GTCGCGACCC TGGCCGCACT GGTCGGCTTC
GATCCGGACC GGGCCACCGG CACGATCACC ACCGGTGGGA CCGAATCGAA CCTGATGGGC
CTGTTCCTCG GTCGGGACGC GGCCCGCCGT GGCCCGACCG GGCAAGACGC TTTGGGCCCG
GCCGCCCCAG GTCACGATGC CGGGCACCAA GGAGGCCCCG GGCACCGAGG AGCGGACCGG
CCGGCACCTC GGGTGTTCCG TTCGGCGGCG GCACACTTCT CGATTGATCG GGCGGCGTCC
CTGCTCGCGA TCGACGCGCC TCCGGTGCTG GTCATCGAGA CCGACGACCG GCACCGGATG
CGCGTCGAGG CGCTCCGTCA CGCCCTGGCC GCGCACGCCG GGCCGGCCAT CGTCGTGGCC
ACCGCTGGTA CCACCGATGC GGGCGCGGTC GACCCGCTTC GGCAGATCGC CGCGGTGGTC
GAGGAACATC GCCTCCGGTT AGGTGGGTCG CAGGACCCGA GCAGGCCATC GGGCATGGAG
GCAAGGTCCG GCAGGGCGGC CTGCTGGTTT CACGTGGACG CCGCCCACGG CGGCGGCGCG
TTGCTGTCCG AGCGGCTGGC CGGCCTGCTG GACGGACTCG ACCTCGCAGA TTCGGTCGCA
CTGGATCTGC ACAAACTCGG CTGGCAGCCG GCGCCGGCCG GGGTCTTCCT CACCGCCCGC
GACGACGGCT GGGCCAGCCT CGCGACACGG GCGGAGTACC TCAACCCGGA GGATGACGAG
GCGGCCGGCT TCACCAGCCT GCTGGGCCGG TCGCTGCGGA CCACCCGCCG CGCGGACGCC
TTCCCCATCG CGGTCACCCT TCGGGCCCTC GGCCGCGACG GTCTCGGCGC CCGGGTGGAT
GCCTGCCATG ATCTCGCGCA GCACGCGGCA CGGACGGTGC GCGCCGACCC CCGTCTCGAA
CTCGCCTTCC CGGTAACACT CAGCACCCTC GTCTTCCGCT ACCGGCCGCC ACAGGCCATC
TCGGATCCGA CCGCGTCCGG CCCCACCGCA TCCGGCCCCG CGGGCCCGCC CTCCCCCGAC
CGGGTGGACC GGATCAACGC CCGGCTGCGC CGGGAACTGC TCGTCGCCGG CCGGGCCGTC
GTGGGGCGCA CCCAACTCGG TCCCCGTCAC GCGGTCTTCC TGAAGCTGAC TCTGCTCAAT
CCCGACGCCA CCACGGCGGA CGTCGACGCG CTGCTCGGGC TGATCGCCGA GACCGGGGAC
GTCCTTGCCG CCGGTGGTTC CACCAGGGCC CGGCGGCGGT CGTGA
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| Protein sequence | MVDLALAALD DGRRIRGGPL PAGGPPVVRA MTRAALGLTP ADPAPADPAP PDSTGTLLPR
TGIGPSAALT GLVEALAAGS ADPADPWCAA HLHCPPLAVA VAADLAVSAL NPSLDSWDQA
PAATTIETEV VATLAALVGF DPDRATGTIT TGGTESNLMG LFLGRDAARR GPTGQDALGP
AAPGHDAGHQ GGPGHRGADR PAPRVFRSAA AHFSIDRAAS LLAIDAPPVL VIETDDRHRM
RVEALRHALA AHAGPAIVVA TAGTTDAGAV DPLRQIAAVV EEHRLRLGGS QDPSRPSGME
ARSGRAACWF HVDAAHGGGA LLSERLAGLL DGLDLADSVA LDLHKLGWQP APAGVFLTAR
DDGWASLATR AEYLNPEDDE AAGFTSLLGR SLRTTRRADA FPIAVTLRAL GRDGLGARVD
ACHDLAQHAA RTVRADPRLE LAFPVTLSTL VFRYRPPQAI SDPTASGPTA SGPAGPPSPD
RVDRINARLR RELLVAGRAV VGRTQLGPRH AVFLKLTLLN PDATTADVDA LLGLIAETGD
VLAAGGSTRA RRRS
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