| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3787 |
|---|
| Symbol | |
|---|
| ID | 3906072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 4537962 |
|---|
| End bp | 4539242 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637881114 |
|---|
| Product | UBA/THIF-type NAD/FAD binding fold |
|---|
| Protein accession | YP_482867 |
|---|
| Protein GI | 86742467 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0476] Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0499391 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.724918 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCGA TCCTCAAGCC GGGCCTGCGC CGGCTCTGGC ACAACAGCTC CACCCTGCAG
CTCGGTATCG ACACCGCACG CGCCGTCATC CTCGCCGACC TGGCCCCGTC GGACGCCGCC
CTGCTCGACG CCCTCGACGG CAGCCGCACG CTGGAGCAGC TGCGTCTCGA TGGCACTCCC
GCCGGCCGGG TCCTGCTCGA CCTGCTCGCC GAGGCCGGTC TGCTGGACGA CGCCACGGCG
CCTCCCGGTG CGGCACCGCT GCCCGCGGTC GAGCATGACC GTCTGTCGCC CGACCTGGCG
GCGCTGTCCC TGGTGTCGGA GGATCCGGCC GGTGCCCGCC GGGTCCTCGC CACCCGCCGG
GCGATGCGGG TCCTCGTGCG CGGCGCCGGT CGCGTCGGTG CTCAGGTCGC GGCCCTGCTC
GCCGCGGCCG GGATCGGTCG GGTCGTCATC GACGATCCCG AGGTGACGAC CGCCGCCGAC
GTCTCCCCGG GCGGCCTGCG CCTCGACGAC GTGGGGCGTC CCCGGTCCCT GGCCACCGGC
GCGGCGGTGA CCCGGGCCAG CCGGCAGGGC GCCGGGCACC GTCGGCCCGA CGAGGACCGG
TTCGCCGCGG ATCTGATCGT GCTGGCTCCG GTCGGTCTGC CGATGATCCA CCCTGGGGAG
TGCCTCGATC TGGAAGGCCG AGGCACCGCC CATCTCGTGG CCGGAGTGCG GGAGACCACG
GGGATCGTCG GTCCGCTCGT CGTGCCGACC GTGACCGCGT GCCTGCACTG CCAGCACCTC
CACCGGTACT CCCGGAACCC GGTCTGGCCG GTGCTCGCCA TGCAGATGGT CCACCGCCCG
GCCACCGGGC CGGACGCCTG CGAGATCACC CTGGCGGGTC TTGTCGCCGC GCTCACCGCC
ATGCAGGCCC TGGCCTTTCT GGACCTCGCC GCCTCGCCTC CACCCGACCT ATCCGCCCTA
TCTGCCCTAT CTGCCCTATC TGCCCCACCC GACCTGTCCG GCGTCACGGG ACCCGCCCCG
GGCCAACATC CCGATAACTC GGACCATCTG CCACCGACAG CAAGCAGCCA TAATGAGACC
TTCATTACAT TGACTTCCCC GCGCACGGTC CTACCGGTGA CCGCGGTCCT ACCGGTGACC
GCCGACGGCA CGCTGGAGTT CACCGTTCCC GGCTGGCGGA TTCGCCGACG CACCTGGCCG
GTCCACCCCA ACTGTCCCTG CCGCACCGCC CGATCGGCGG CCGCGTCGGC GGAGGCCTCT
GCGCCGGTGG CACCCGCGTG A
|
|---|
| Protein sequence | MRPILKPGLR RLWHNSSTLQ LGIDTARAVI LADLAPSDAA LLDALDGSRT LEQLRLDGTP
AGRVLLDLLA EAGLLDDATA PPGAAPLPAV EHDRLSPDLA ALSLVSEDPA GARRVLATRR
AMRVLVRGAG RVGAQVAALL AAAGIGRVVI DDPEVTTAAD VSPGGLRLDD VGRPRSLATG
AAVTRASRQG AGHRRPDEDR FAADLIVLAP VGLPMIHPGE CLDLEGRGTA HLVAGVRETT
GIVGPLVVPT VTACLHCQHL HRYSRNPVWP VLAMQMVHRP ATGPDACEIT LAGLVAALTA
MQALAFLDLA ASPPPDLSAL SALSALSAPP DLSGVTGPAP GQHPDNSDHL PPTASSHNET
FITLTSPRTV LPVTAVLPVT ADGTLEFTVP GWRIRRRTWP VHPNCPCRTA RSAAASAEAS
APVAPA
|
|---|
| |