| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3620 |
|---|
| Symbol | leuD |
|---|
| ID | 3904174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4322904 |
|---|
| End bp | 4323491 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637880941 |
|---|
| Product | isopropylmalate isomerase small subunit |
|---|
| Protein accession | YP_482701 |
|---|
| Protein GI | 86742301 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0066] 3-isopropylmalate dehydratase small subunit |
|---|
| TIGRFAM ID | [TIGR00171] 3-isopropylmalate dehydratase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.694512 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGCGT TCACGATTCA CACCGGGCGC GCGGTGCCGC TGCGCCGCAG CGACGTCGAC
ACCGATCAGA TCATTCCAAG TGAGTGGCTC AAGCGGATCG AGCGGACGGG ATTTGGCGCC
GGCCTGTTCG CGCAGTGGCG CGCCGACGAC GGCTTCGTGC TGAACGAACC AGCGTACGCC
GCGGCGTCGA TCCTACTGGC CGGCTCGGAC TTCGGCACCG GTTCCTCGCG GGAGCACGCC
GTCTGGGCGC TGCAGGACTA CGGGTTCCGT GCCGTGCTCT CGCCCCGGTT CGCGGACATC
TTCCGCGGCA ACGCCCTCGG CAACGGCCTG TTGCCGGTGC AGCTGTCGGC TGAGACGGTC
GAGGCACTCA CGTCCGCGGT CGAGGCCGAT CCCACGATCG AGATCACTGT CGATCTCGTC
GCGCGCGAGG TCCGGGGCGC GGGGCTGGTG GCCACCTTCG ACCTCGACGA CTTCACCCGC
TGGCGGTTGA TGGAGGGGCT CGACGACGTC GGGCTGACCC TTCGCCACGA AGATATGATC
ACCTCTTTCG AGGCCGGTCG GCCCGCCTGG TCGCCGACCA CCGCCTAA
|
|---|
| Protein sequence | MEAFTIHTGR AVPLRRSDVD TDQIIPSEWL KRIERTGFGA GLFAQWRADD GFVLNEPAYA
AASILLAGSD FGTGSSREHA VWALQDYGFR AVLSPRFADI FRGNALGNGL LPVQLSAETV
EALTSAVEAD PTIEITVDLV AREVRGAGLV ATFDLDDFTR WRLMEGLDDV GLTLRHEDMI
TSFEAGRPAW SPTTA
|
|---|
| |