| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3558 |
|---|
| Symbol | truB |
|---|
| ID | 3904497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4255698 |
|---|
| End bp | 4256681 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637880879 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_482639 |
|---|
| Protein GI | 86742239 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.567602 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.599891 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACCC GGGGGGGATC CACCCGGGGA TCCGCGCGGC CGGGGGGAGC CGCATCCCGC
CGGGGATCCG GTCCCGGTCC CAGTCCCGGG CCACAGGTCG ACGGGCTCGT CGTCGTGGAC
AAGCCGGCCG GCTGGACGTC GCACGATGTC GTCGCCAGGG CGCGGCGCAT TCTCGGGCAG
CGTCGGATCG GCCACGCGGG CACCCTCGAT CCGATGGCGA CGGGCGTGCT GGTGCTGGGA
GCCGGCCGGG GAACCCGCCT GCTCGGACAT CTCGCCCTCA CCGACAAGGT GTACGACGCC
ACGATCCGGC TCGGCCGGAC TACCACGACC GACGACGCCG AGGGCGCGCC GGTCGAGGAC
CGTCCGGTGG ACGTCGACGC CGACCGGCTC ACGCGGGCCA TGGCCGCCCT TACCGGGGTG
CTCGACCAGG TTCCTGCCAG CGTGAGCGCG GTCAAGGTGG GCGGGGTACG CGCGTACGCC
AGGGTCCGGG CCGGCGAGGT GGTCGATCTC GCCCCACGCC GGGTGACGGT CCACCGCTTC
GACCTGCTGG CGCGGCGGGC CGCGGGCGAC GGGGCGGTGG ACCCGGCCGG AACCGATTTG
GAGGTCACGG TCGGTTGCTC CAGTGGAACA TACGTGCGGG CGCTCGCCCG TGATCTCGGG
GCGGCGTTGG ACTGCGGGGC GCATCTGACC GCCCTGCGGC GCACCGCCGT TGGTCCCTTC
GACCTGGCGG GCGCAGTGAC TCTCGACACG TTCGCCGAGC TGGGGCCGCG GGCGGTCACA
TCGCTGACCG ACGCGGTCGC GGCCGGCTTC CTGCGCCGCG ACGTGACGGC GGAGGCGGCA
GCGGACGTGT CCCATGGCCG ACGGTTGCCC CCGGTGGGAC GGCCGGGTAC GTACGGCGTC
TTCGGTCCCG ACGGGACCGT GCTGGCCCTG GTCGAGGAGA CCGAGCATGC GGTCCGGTCG
CTCGTCGTCT TCGCCCCGGT CTAG
|
|---|
| Protein sequence | MSTRGGSTRG SARPGGAASR RGSGPGPSPG PQVDGLVVVD KPAGWTSHDV VARARRILGQ
RRIGHAGTLD PMATGVLVLG AGRGTRLLGH LALTDKVYDA TIRLGRTTTT DDAEGAPVED
RPVDVDADRL TRAMAALTGV LDQVPASVSA VKVGGVRAYA RVRAGEVVDL APRRVTVHRF
DLLARRAAGD GAVDPAGTDL EVTVGCSSGT YVRALARDLG AALDCGAHLT ALRRTAVGPF
DLAGAVTLDT FAELGPRAVT SLTDAVAAGF LRRDVTAEAA ADVSHGRRLP PVGRPGTYGV
FGPDGTVLAL VEETEHAVRS LVVFAPV
|
|---|
| |