| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3555 |
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| Symbol | |
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| ID | 3904494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 4251773 |
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| End bp | 4253962 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637880876 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_482636 |
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| Protein GI | 86742236 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR02696] guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.50127 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACGACT CGACACATGC GGCCGAAGCG GTCATCGCGA CCCCGGCCGG AGACCGGACG
GTTCGGTTCG AGACCGGACG TCTCGCCAAG CAGGCCGCCG GCTCCGCCGT CGCCTACCTG
GGCGACACGA TGGTGCTCTC GGCGACGACG GTCAGCAAGC AGCCCAAGGA ACAGCTCGAC
TTCTTCCCGC TGACGGTGGA TGTCGAGGAG CGGATGTACG CGGCCGGGCG CATCCCCGGT
TCGTTCTTCC GGCGGGAGGG CCGCCCCAGC GAGGACGCGA TCCTCACCTG CCGGCTCATC
GACCGGCCGC TGCGGCCGTC GTTCGCCAAG GGGCTGCGCA ACGAGATCCA GGTCGTGGCC
ACCGTGCTCG CCCTGGATCC CGACACCCTT TACGACGTGG TCGCCATCAA CGCGGCCAGC
GCGTCGACGA CGCTGTCCGG CCTGCCCTTC ACCGGGCCGA TCGGTGCGAC CCGGGTCGGG
TTCGTCGACG GCGAGTGGAT CGCCTTCCCG ACCCATGCGG AGCTCGCTCG GGCGACCTTC
GACATGGTCG TGGCCGGTCG GGTGATCGAG GACGGCTCGG ACGTCGCGAT CATGATGGTG
GAGGCCGAGG CGACCCCGGG CACGGTCGAG CTGCTCGCGC ACGGCGCGCC GGCTCCCACC
GAGGAGGTCG TGGCCGCGGG CCTCGAGGCG GCGAAGCCCG CCATCCGTGA GCTCTGCCGG
GCCCAGAGCG AGCTGGCCGC GCTCGCCGCG AAGCCTGCCC GGGAGTTCCC CGTCTTCATC
GACTATCACG ACGACGTGCT GGACGCGCTG TCCGCGGCAA TCGGCGACGA GCTGTCCGCC
GCGCTGCGCA TCCCCGGCAA GGCTGAGCGC GAGAACGAGC TCGACCGGGT CCGCCAGCTC
GCGGCCGAGA AGGTGGCCTC CCAGTTCGAG GGGCGAGAGA AAGAGATCGG CGCCGCCTAC
CGGGCGCTGA CCAAGAAGCT CGTCCGCTCC CGCATCGTGA CCGAGAGCGT GCGCATCGAC
GGTCGCTCGA CAACCGAGAT CCGCGCGCTG TCGGCCGAGG TCGACTACAT CCCGCGGGTA
CACGGCTCGG CGCTGTTCGA GCGGGGCGAG ACGCAGATCC TCGGCGTCAC GACCTTGGCC
ATGCTGCGCA TGGAGCAGAC GGTCGACACG CTCAACCCCG ACCGCACCAA GCGGTACATG
CACAACTACA ACTTCCCGCC GTACTCCACC GGCGAGACCG GCCGCGTCGG TTCGCCGAAG
CGCCGAGAGA TCGGCCACGG GGCACTCGCC GAGCGGGCCC TGCTCCCGGT GCTGCCCAGC
CGCGAGGAGT TCCCCTACGC GATCCGGCAG GTATCCGAGG CGCTGGGTTC GAACGGGTCA
ACGAGCATGG GCTCGGTGTG CGCGAGCACC CTGTCGCTGC TCAACGCCGG GGTACCGCTC
AAGGCGCCGG TCGCCGGGAT CGCGATGGGC CTCATCCACG CCGACGACTC CTACGTCACC
CTGACCGACA TCCTCGGGGC CGAGGACGCC TACGGGGACA TGGACTTCAA GGTCGCCGGC
ACCCGGGACT TCGTCACCGC GCTCCAGCTC GACACCAAGC TCGACGGCAT CCCGGCCTCG
GTCCTCGCCG CGGCGCTCCA GCAGGCGCGC GGGGCGCGGC TCGCGATCCT CGACGTGATG
GCCGAGGCCA TCGGCAGCCC GGACGAGATG TCCGCTCACG CCCCGCGGGT CATCTCCGTC
AAGATCCCGG TGGACAAGAT CGGGGAGGTC ATCGGACCCA AGGGTAAGAT GATCAACCAG
ATCCAGGCGG ACAGCGGTGC CGAGATCACC GTCGAGGACG ACGGGACGAT CTACATCGGC
GCGGTGGACG GTCCGTCGGC GGAGTCCGCC CGGTCGGCGA TCAACGCGAT CGCCAACCCG
CAGATGCCCG AGGTCGGCGA GCGTTATCTG GGGACGATTG TGAAGATCAC CAATTTTGGG
GCCTTCGTCT CGCTCACCCC GGGCCGGGAC GGCCTGCTCC ACGTCAGCAA GCTCAAGACA
CTCTCCGGCG GTAAGCGGGT AGAGAAGGTG GAGGACGTCC TGACGGTGGG CCAGAAGCTC
CAGGTCGAGA TCACCGAGAT CGACAGCCGC GGGAAGATCA GCCTGTCCCC GAGCGCCGAA
GCCGCCGACG CGGCGGCCGC CGCCTCCTGA
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| Protein sequence | MDDSTHAAEA VIATPAGDRT VRFETGRLAK QAAGSAVAYL GDTMVLSATT VSKQPKEQLD
FFPLTVDVEE RMYAAGRIPG SFFRREGRPS EDAILTCRLI DRPLRPSFAK GLRNEIQVVA
TVLALDPDTL YDVVAINAAS ASTTLSGLPF TGPIGATRVG FVDGEWIAFP THAELARATF
DMVVAGRVIE DGSDVAIMMV EAEATPGTVE LLAHGAPAPT EEVVAAGLEA AKPAIRELCR
AQSELAALAA KPAREFPVFI DYHDDVLDAL SAAIGDELSA ALRIPGKAER ENELDRVRQL
AAEKVASQFE GREKEIGAAY RALTKKLVRS RIVTESVRID GRSTTEIRAL SAEVDYIPRV
HGSALFERGE TQILGVTTLA MLRMEQTVDT LNPDRTKRYM HNYNFPPYST GETGRVGSPK
RREIGHGALA ERALLPVLPS REEFPYAIRQ VSEALGSNGS TSMGSVCAST LSLLNAGVPL
KAPVAGIAMG LIHADDSYVT LTDILGAEDA YGDMDFKVAG TRDFVTALQL DTKLDGIPAS
VLAAALQQAR GARLAILDVM AEAIGSPDEM SAHAPRVISV KIPVDKIGEV IGPKGKMINQ
IQADSGAEIT VEDDGTIYIG AVDGPSAESA RSAINAIANP QMPEVGERYL GTIVKITNFG
AFVSLTPGRD GLLHVSKLKT LSGGKRVEKV EDVLTVGQKL QVEITEIDSR GKISLSPSAE
AADAAAAAS
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