Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3005 |
Symbol | |
ID | 3905502 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 3563167 |
End bp | 3565431 |
Gene Length | 2265 bp |
Protein Length | 754 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637880325 |
Product | methylmalonyl-CoA mutase |
Protein accession | YP_482091 |
Protein GI | 86741691 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit [COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.598546 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.356991 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACGG ACAGCTCGCA ACGTGCCACG ATGATCCCGG ACTTCTCCGC GGTGGAGCTG GGCACCACGC CGGCCGGGGC GGACACGGCG GAGGGTGAGT GGCGGGCCGC CCTGGAGGCG GCGACCGGCA AGGACGCCGA CGCGCTGACC TGGGATACCC CCGAGGGCAT CGCGGTGAAG CCGCTCTACA CCGCCGCCGA CACCGCGGGC CTGGACTTCC TGGGCACCTA CCCGGGGATC GCGCCCTTCC TGCGCGGCCC ATACCCGGCG ATGTACGTCA CCCAGCCGTG GACCATCCGC CAGTACGCCG GGTTCTCCAC CGCCGCCGCG TCGAACGCCT TCTACCGGCG CAACCTCGCC GCCGGGCAGA AGGGCCTGTC GGTCGCCTTC GACCTGCCGA CCCACCGCGG CTACGACAGC GACCACCCAC GGGTCACCGG CGACGTCGGC ATGGCCGGCG TCGCCATCGA CTCCATCCTC GACATGCGCC AGCTGTTCGA CGGTATCCCG CTGGACAAGA TGAGCGTGTC GATGACCATG AACGGCGCCG TGCTGCCGGT GCTGGCACTC TACATCGTCG CGGCCGAGGA GCAGGGGGTG GCCCCGGGGC AGCTCGCCGG GACCATCCAG AACGACATCC TCAAGGAGTT CATGGTCCGC AACACCTACA TCTACCCGCC GCAGCCGTCG ATGCAGATCA TCTCGGACAT CTTCTCCTTC ACCTCGCGGC GGATGCCGCG GTTCAACTCG ATCTCGATCT CCGGCTACCA CATGCAGGAG GCCGGGGCGA CGGCCGATCT GGAGCTCGCC TACACCCTGG CCGACGGGGT CGAGTACATC CGGGCAGGGC TGGGCGCGGG GCTGGACATC GATGCGTTCG CACCAAGGCT GTCGTTCTTC TGGGCGATCG GCATGAACTT CTTCATGGAG GTCGCCAAGC TGCGCGCGGC CCGGCTGCTG TGGTCGCGGC TGGTCAACCA GTTCACCCCG AAGAGCGCCA AGTCGCTGTC GCTGCGGACC CACTCGCAGA CCTCGGGTTG GTCGCTGACC GCCCAGGACG TGTTCAACAA CGTGGTGCGC ACCTGCGTGG AGGCGATGGC CGCCACCCAG GGGCACACCC AGTCGCTGCA CACCAACGCC CTCGACGAGG CGCTGGCCCT GCCGACGGAC TTCTCGGCCC GTATTGCCCG CAACACCCAG CTGCTGCTGC AGCAGGAGTC CGGCACCACC CGGGTGATCG ACCCGTGGGG CGGCAGCTAC TACGTCGAGC GGCTCACCCA CGACCTGGCC CGCCGGGCCT GGGAGCACAT CGACGAGGTC GAGGCCTCGG GCGGCATGGC GCAGGCCATC GACGCTGGGA TCCCGAAGAT GCGTATCGAG GAGGCCGCCG CCCGCACCCA GGCCCGCATC GACTCCGGCC GCCAGCCGCT GATCGGAGTG AACAAGTACC GCGTCGACGC GGACGAGGGC ATCGAGGTGC TCAAGGTCGA CAACTCGGCG GTGCGCGCCG AGCAGATCGA GAAGCTGCGC CGGCTGCGCG CCGACCGTGA CCCGGCCGCG GTGGAGGCGG CGCTGCACGC CCTGACCGCG GCGGCCGACG CGGCCCGCGA CGGGCGCCGC GGCCCCGGGC TGGAGCAGAA CCTGCTGACG CTCGCCGTCG ACGCGGCCCG GGCTCAGGCG ACGGTCGGGG AGATCTCCGA CGCGCTGGAG AAGGTCTACG GGCGTCACGC GGGCCAGATC CGTACCATTT CCGGGGTGTA CCGGGACGAG GCGGGACCCG CCGGTAACAT CGTCGCCGCC CGCGAGGCCG CCGCCGCCTT CGAACGCGCC GAGGGTCGCC GGCCCCGGAT CCTGGTCGCG AAGATGGGCC AGGACGGTCA CGACCGCGGC CAGAAGGTGA TCGCCACCGC GTTCGCCGAC CTCGGCTTCG ACGTGGACGT CGGCCCGCTG TTCCAGACCC CGGCCGAGGT CGCCCGCCAG GCCGTCGAGG CGGACGTCCA GATCATCGGC GTCAACTCGC TGGCCGCCGG CCACCTCACC CTGGTGCCCG CGCTGCGCGA GGAGCTCGCC GCGCTCGATC GGCCCGACAT CCTCATCGTG GTCGGCGGGG TCATCCCTCC CGGCGACTTC GACGAGCTGC GGGCCGCCGG CGCCGCCGCG ATCTTCCCGC CCGGCACGGT CATCGCCGAC GCCGCGCTGG ACCTGCTCGC GACCCTGTCG GCCCAGCTCG GTCACCCCGC TCACCCCGCT CACCCCGCGG CCTGA
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Protein sequence | MSTDSSQRAT MIPDFSAVEL GTTPAGADTA EGEWRAALEA ATGKDADALT WDTPEGIAVK PLYTAADTAG LDFLGTYPGI APFLRGPYPA MYVTQPWTIR QYAGFSTAAA SNAFYRRNLA AGQKGLSVAF DLPTHRGYDS DHPRVTGDVG MAGVAIDSIL DMRQLFDGIP LDKMSVSMTM NGAVLPVLAL YIVAAEEQGV APGQLAGTIQ NDILKEFMVR NTYIYPPQPS MQIISDIFSF TSRRMPRFNS ISISGYHMQE AGATADLELA YTLADGVEYI RAGLGAGLDI DAFAPRLSFF WAIGMNFFME VAKLRAARLL WSRLVNQFTP KSAKSLSLRT HSQTSGWSLT AQDVFNNVVR TCVEAMAATQ GHTQSLHTNA LDEALALPTD FSARIARNTQ LLLQQESGTT RVIDPWGGSY YVERLTHDLA RRAWEHIDEV EASGGMAQAI DAGIPKMRIE EAAARTQARI DSGRQPLIGV NKYRVDADEG IEVLKVDNSA VRAEQIEKLR RLRADRDPAA VEAALHALTA AADAARDGRR GPGLEQNLLT LAVDAARAQA TVGEISDALE KVYGRHAGQI RTISGVYRDE AGPAGNIVAA REAAAAFERA EGRRPRILVA KMGQDGHDRG QKVIATAFAD LGFDVDVGPL FQTPAEVARQ AVEADVQIIG VNSLAAGHLT LVPALREELA ALDRPDILIV VGGVIPPGDF DELRAAGAAA IFPPGTVIAD AALDLLATLS AQLGHPAHPA HPAA
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