Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_2867 |
Symbol | |
ID | 3905998 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 3380103 |
End bp | 3381692 |
Gene Length | 1590 bp |
Protein Length | 529 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 637880188 |
Product | pyridoxal-dependent decarboxylase |
Protein accession | YP_481954 |
Protein GI | 86741554 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.121962 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAGGCA TGCCGCCCGT TGACGCGCTC CGCGCGGCAC TGCGCGCCGC CGCCGGGCAT GCCGACGCCT ACCTGGCGGG TCTGGCCGAT CGTCGGGTCG GCCCCAGCCT GACCGCCGAG CAGGTCCGCC GCCGGCTCGG CGACACGCTG CCGGCAGGCC CGAGCGACCC GGTGGCGGTC ATCGACGCCC TGGTCGACGC GGTGGCCGGC GGCCTCACCG CGACCGGCTC GGGCCGCTTC TTCGGCTACG TCGTCGGCGG GACCCTGCCG GCGGCGCTCG CCGCCGACCT GCTCACCGTC GTGTGGGACC AGAACGCCGC CCTGGCCTCC CTCTCCCCGG CCGCCAGCGC CGTCGAGGCG CTGACCGGCC GCTGGATCGC GCAACTGCTC GGCCTGCCGT CGGGGGTGTC CGTCGGGTTC ACCACCGGCA CCCAGATGGC GCACGTGACC GCCCTGGCGG CCGCACGGCA CCGGGTGCTG GCGCGGGCCG GCTGGGATGT CGAGACGGAC GGTCTCGCCG GGGCGCCGCC CGTGCGGGTC CTGGTCGGTG CCGCCCGGCA CGCCACCGTC GACGCCGCGT TGCGCCTGCT CGGATTCGGC ACCCGCGCGA CGATCGCCGT CGAGGCCGAC GAACTCGGGC GGATGCGCCC CGAGGCGCTG CGGGCGGCCC TTGCCGACGA GAGCGGCGGG AGCGGGCCGA CGATCGTGAT CGCCCAGGCG GGGGAGGTCA ACACCGGCGG GTTCGACCCC TTCGAGGAGG TGTGCGCGCT GGCCCGCGAA CACGGCGCCT GGGTACACGT GGACGGTGCG TTCGGGCTGT GGGCGGCGGT GTCGGCGGCG GCGTCCCGGC GCGCCCTCGT CGCCGGGGTC GAGCGGGCCG ACTCGTGGGC GACCGACGGC CACAAGTGGC TCAACGTCCC GTACGACTGC GGGATCGCGC TCATCGCGGA CCGCGAGGCG CACCGGCGGT CGATGTCGGT CTCGGCGGAT TACTTCGTCC TCGACTCCGC CGGCCGGCTC GACCCGGTCG ACTGGACACC GGAGTTCAGC CGCCGGGCAC GGGCCTTCGC CGTATACGCG GCGCTGCGCT CGCTCGGCCG GGCGGGGCTG CGCGATCTGG TGGACCGGTG CTGCGAGTAT GCCAACCGCT TCGCCGTGCG GCTCGCCGCT CTTCCCGGGG TGACGGTGCT GAACTCGGTG GCCGGCCCAG CCGGGTCAGC CGGGTCAGCC GGCCCGGGCC GCGTCGTGGA GCTCAACCAG GTGCTGATCC GGGTGGTGGC AGACCAGGAG GGCGACCGGA CGGCGGCCGG GCGGGCGGAG GGCGACCGGC TGACGGCGGC GGTCACGGCC GCGGTGACGG CGAGCGGCGA GGCGTTCGTG AGCGGCACGG TGTGGCGGGG GCGCACGGCG ATGCGCATCT CGGTAAGCAA CTGGTCGACC TCGGACGGCG AGGTGGAGCG GACGATCGCG GTGATCGAGG CCGCCGTCGC CGAGGCGCGG GGGACGACCG TGCGGGGGAC GACCGTGCGG GGGACGACCG TGGCGGCGCC GAGCGGCGGC GGTACGCACC GCGGCGGTAT CGCTTCGTAG
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Protein sequence | MRGMPPVDAL RAALRAAAGH ADAYLAGLAD RRVGPSLTAE QVRRRLGDTL PAGPSDPVAV IDALVDAVAG GLTATGSGRF FGYVVGGTLP AALAADLLTV VWDQNAALAS LSPAASAVEA LTGRWIAQLL GLPSGVSVGF TTGTQMAHVT ALAAARHRVL ARAGWDVETD GLAGAPPVRV LVGAARHATV DAALRLLGFG TRATIAVEAD ELGRMRPEAL RAALADESGG SGPTIVIAQA GEVNTGGFDP FEEVCALARE HGAWVHVDGA FGLWAAVSAA ASRRALVAGV ERADSWATDG HKWLNVPYDC GIALIADREA HRRSMSVSAD YFVLDSAGRL DPVDWTPEFS RRARAFAVYA ALRSLGRAGL RDLVDRCCEY ANRFAVRLAA LPGVTVLNSV AGPAGSAGSA GPGRVVELNQ VLIRVVADQE GDRTAAGRAE GDRLTAAVTA AVTASGEAFV SGTVWRGRTA MRISVSNWST SDGEVERTIA VIEAAVAEAR GTTVRGTTVR GTTVAAPSGG GTHRGGIAS
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