Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_2597 |
Symbol | |
ID | 3906503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 3064426 |
End bp | 3066210 |
Gene Length | 1785 bp |
Protein Length | 594 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 637879922 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_481688 |
Protein GI | 86741288 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.158438 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCCGA CGCCGCAGCC CGATGGTCAG GTACGCAGCG ACATCTGCGG GCCTCGGCCC GGCCTGCCGG ACCCGCGGGC ACTCGCCCGG TGGGAAGAGG CGCTGCTGTG TCTGCGGGTG TTCGACACGG CGCCGATCAT ATTCGCGGTC TTCGACCGCG GCCTGCGCTA CCGGGCGGTG AACCAGGCGG CTGCCAGGGC CTCCGGCCTG TCCGCCGAGG AGATGATCGG TGGGTATGGC CCGGAGGTGC TCCCGGGCAT AGACCCTCTC GGCTGGGAGC GGCCCCGCCG GGTGTTGGCG ACCGGTGAGG CGATCCTCGA CGAGGAGATC ATCGGAGCGA CCCCGGCGGA CCCGTCGAAT CCGCGCATCT GGCGGGCCTC CTACTATCCC CTGCATGACT CGACCGGGGC CAGAATCGCG GTCGGCGTGA CGGCGGTGGA CGTGACCGAC GAGCGTCGCG CGCAGGCCGA ACGTGACCTG GTACTGCGGC GGTTGCGGCT GCTGAGCCGG GCGAGCGGGC TGCTCGGCGC GTCGCTGGAC CTGTCGGCCA CCTTGCGGGA GATGGTCACG CTGGTCGTCC CGGAATTCGC CGACGCCTGC GAGCTGTACC TCGCCGACGA GCCCTGCCCC CCGGGGGCCG AACCCGACCC GCCGCTGCTT CGCCGAGCCG TGTGGGCACA CTCCCCCGAC CTGCCCCGAC CATCCCCCGA CCTGCCCCTC CCCCCACCAG ACACAAGAAG CAACCTGACC GGACGCCAGG TCGGACGGGT ATTCCTCACC CGCCAACCGG TCCGCCTCGA CCTGGACGAA CGGCTCCCCG ACGCACCCGA CGCACCCGAC GCACCCGCGA GCAGCGTGGC CGCCCTGTTC CGGCATTCCC ACCTTCGATC CGCGATCATC GTCCCGCTGC TGGTCGGCCC GCACTGCCTG GGAACCGTCG GGTTCGCCGT CACCGCGGCC CGCCCCTACC GCGAGCAGGA CACCCAGACC GCCACCGAAC TGGGCAGCCG GATCGCAACC GCGATCGCGA ACGCCCACGC CTTCGACCAC CAGCGGACCG CCGCCCTGAC CCTGCAACGC GCCCTGCTGC CCCGCGACAT CCCCACCCTG GACGACCTCG ACCTGGCCTG GCGCTACCAG CCCGGCACCA GCGGCACCGA GGTCGGCGGC GACTGGTTCG ACGTCATCCC CCTGCCGGCC GGACGGGTCG CGCTGGTCAT CGGCGACGTC ATGGGCCGCG GCCTGAACGC CGCCGCCGCC ATGGGCCAGC TACGCACCGC CGCCCGCACC CTCGCCCGCC TCGACCTGCC CCCCGCCGCC CTGCTGACCG AACTCGACGC CGTCACCCGC AGCATCGACA CCATCGCCAG CGTCGCCTAC GTCATCCAGG ACCCGGCCAC CAGCACCCTG ACCGTGGCCA ACGGCGGCCA CCTCCCCCCC GCCCTGCGCC ACCCCGACGG CACCGCCGAC CTCCTCGACG ACCCCCACGG GATCATCCTC GGCGTCACCG AACAGACCTT CACCGAAACC CGCCACCGCT TCCCCCCCGG CTCCACCCTC GCCCTCTACA CCGACGGCCT CGTCGAATCC CCCACCGTCG ACATCGGCGA GGGCTGCCGA CGCCTGCTGC GCATCCTCAC CGAAACAGCC GACCTGCCCA CCACCGCGGA CCGGCTACTG ACCCTCCTCA ACCGCAACGA CGGCAACGAC GGCTACGACG ACGACGTCAC CCTCCTCCTC GCCCACGCCC GGCGGGGTCG GTGCGGCCGG TTCAGGGGGC GGTGA
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Protein sequence | MNPTPQPDGQ VRSDICGPRP GLPDPRALAR WEEALLCLRV FDTAPIIFAV FDRGLRYRAV NQAAARASGL SAEEMIGGYG PEVLPGIDPL GWERPRRVLA TGEAILDEEI IGATPADPSN PRIWRASYYP LHDSTGARIA VGVTAVDVTD ERRAQAERDL VLRRLRLLSR ASGLLGASLD LSATLREMVT LVVPEFADAC ELYLADEPCP PGAEPDPPLL RRAVWAHSPD LPRPSPDLPL PPPDTRSNLT GRQVGRVFLT RQPVRLDLDE RLPDAPDAPD APASSVAALF RHSHLRSAII VPLLVGPHCL GTVGFAVTAA RPYREQDTQT ATELGSRIAT AIANAHAFDH QRTAALTLQR ALLPRDIPTL DDLDLAWRYQ PGTSGTEVGG DWFDVIPLPA GRVALVIGDV MGRGLNAAAA MGQLRTAART LARLDLPPAA LLTELDAVTR SIDTIASVAY VIQDPATSTL TVANGGHLPP ALRHPDGTAD LLDDPHGIIL GVTEQTFTET RHRFPPGSTL ALYTDGLVES PTVDIGEGCR RLLRILTETA DLPTTADRLL TLLNRNDGND GYDDDVTLLL AHARRGRCGR FRGR
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