| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2258 |
|---|
| Symbol | |
|---|
| ID | 3905026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2636770 |
|---|
| End bp | 2637444 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637879589 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_481355 |
|---|
| Protein GI | 86740955 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.124896 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0124728 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGGTA TCGTCGGCAC CGTGAGTATC GTCGGCACCG TGAGCACCGT ACGGGTCTTC
CTCCTGGACG ATCATGAGAT CGTCCGGCGT GGCATCCGCG AGATGCTCTC CGAGAACGGT
GACATCGAGG TCGTCGGAGA GGCGTCCACC GCGGCGGAGG CACTGCGCCG GATCCCGGCG
ACGAGGCCGG ACGTGGCCGT GCTCGACGCC CGCCTCGAGG ACGGCAACGG TATCGACGTC
TGCCGGGATC TGCGCTCGGC GCACCCCGAG ATCGGCTGCC TGATCCTCAC CTCCTACGAC
GACGATGACG CCCTGTTCGC CGCCATCATG GCCGGGGCCG CCGGCTACCT GCTCAAGCAG
ATCAGGGGCA CGGACCTGGT CGGGGCCATC CGGACGATCG CCGCGGGCCG TTCCCTGCTC
GACCCGGCCG TCACCCAGCG GGTCCTCACC CGGTTGCGGG AGGGCCCGGC CGAGGACCGC
AAGCTTGCCA CCCTCGGCGA GCGGGAACGC CAGATCCTCG TCCTCATCGC GGAGGGGCTG
ACCAACCGGC AGATCGCCGG GCGGATCCAC CTGTCCGAGA AGACGGTGAA GAACTACGTC
TCGGCCATCC TGGAGAAGCT GGAGCTGTCC AGCCGCACCC AGGCCGCCGT GTACGCCACC
CGCATCGAGA AGTGA
|
|---|
| Protein sequence | MDGIVGTVSI VGTVSTVRVF LLDDHEIVRR GIREMLSENG DIEVVGEAST AAEALRRIPA
TRPDVAVLDA RLEDGNGIDV CRDLRSAHPE IGCLILTSYD DDDALFAAIM AGAAGYLLKQ
IRGTDLVGAI RTIAAGRSLL DPAVTQRVLT RLREGPAEDR KLATLGERER QILVLIAEGL
TNRQIAGRIH LSEKTVKNYV SAILEKLELS SRTQAAVYAT RIEK
|
|---|
| |