| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1945 |
|---|
| Symbol | |
|---|
| ID | 3904307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 2284957 |
|---|
| End bp | 2287407 |
|---|
| Gene Length | 2451 bp |
|---|
| Protein Length | 816 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637879282 |
|---|
| Product | (NiFe) hydrogenase maturation protein HypF |
|---|
| Protein accession | YP_481049 |
|---|
| Protein GI | 86740649 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0068] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.368168 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATGGCGG ACGGCACGGC GGGCCGCATG ACCCGGCCGG TGCTCTCGGT GGGCGGGGCC
GGTGAACCGA GCCGGGAGGC CGGCCCAGGC GGCCGGGCCC GGCGACGGTT CGTCGTCCAG
GGGCTGGTCC AGGGGGTCGG CTTCCGGCCG TTCGTCCACG CCGCCGCGAC GGAGCTGGCT
CTGACCGGCT GGGTGCGCAA CGACACCGGC GGCGTGGTCG CGGAGGTCGA GGGAACCCCC
GGCGCAGTCG AGGACTTCGC CCGCCGGCTT CGCTGCGACG TGCCGCCGCT GGCCATGGTC
GAGCGGGTCG TGACCACGGA ACTTCCGCCC TGCGGCGGAT CCGGCTTCGC GATCGTCCGA
TCCCGGCCGG CCGCGGGTGG GCGTACGGCG GCGGCCCCCG ACGTGGCGAC ATGCCCGGAT
TGCCTGCGGG AACTGGCCGA TCCCGCGGAC CGGCGTTACC GGCATCCGTT CATCACGTGC
ACCAACTGCG GACCCAGGTT CACGATCATC ACCGACCTTC CCTACGACCG GCCGGCAACG
ACGATGGCCC GGTTCGCCAT GTGCCCCGTG TGTGAGCGGG AGTACTCCGA TCCGGCCGAC
CGACGTTTCC ATGCCCAGCC GATCGCCTGC CCGGCGTGCG GACCGCGCCT GGAGTTCGTG
TCGCCGTTGG GCGCGCCGCG GACCGGCGAG GACGCGCTCG CCGCGGCGCG GCGGCTGCTC
GCCGACGGTG GCGTCCTGGC GGTGAAGGGG GTGGGCGGCT ACCACCTCGC CTGCGTCGCC
ACCGACCCGA CGGCGGTGAC GACCCTGCGA CGCCGCAAAC GGCGCGGCGG CAAGCCGTTC
GCCGTCATGG TCCACGACCT GGCTGCGGCC CGGGCCCTGG CGCATGTCGA CGAGCGGGAG
GCGGCCCTGC TCACCGACCC CGCTCGGCCC ATCGTGCTGG TGCGCCGCCG TCGCGACGGC
CGTCCCGCGC TCGCCGACTC CGTTGCCCCG GACAACCCCG ATCTCGGTCT GCTGCTGCCC
TACACGCCGG TGCACCATCT GCTGCTCGGC CTGCCAGGCG AGCCCGTGCC CCTCCATCGA
ACCGTCGGCA CCGCCGGATG GCCGCCGTTG GTGATGACCT CCGGGAACCT CGGCGGCGAG
CCGATCGCGG CCGAGGACAC CGACGCCCTG CGCCGGCTCG CCCCGCTTGT CGATGGCTGG
CTGCGCCACG ACCGTCCGAT CCGGGTGCCC TGCGACGACT CCGTTGTCCG GGTGGTCGAT
GGTGCCCCGT CGCCGGTACG CCGCTCGCGT GGCTACGCGC CGTTGCCGGT GCCGCTGCCG
TTCGAGGTGC CCCCGACGCT GGCCGTCGGG GCCGACCTCA AGAACACCTG CGGCCTGGGC
GCGGGCCGGT CGGCCTGGCT CAGCGGGCAC ATCGGGGACA TGGACGACCT GGCCACCCTG
CGCGCCTTCG ACGCCGCCGA GCGGCACCTC GAGCACCTGA CCGGCGTCAC CCCCCGCCAG
CTCGTCACCG ACGCGCATCC GGGCTATCGG TCGCGCCAGT GGGCTGTGCG GCACGCCGCC
GGCCGACCGA TACGGACCGT GCAGCATCAC CATGCCCATG TGGCCGCGCT GATGGCCGAG
CACGGCCTCG ACGGCACCCG GCCGGTGGTG GGATTCGCCT TTGACGGGAC CGGCTACGGC
CCCGACCGGG CCGTGTGGGG CGGCGAGGTG CTGATCGCCG ACTACCGCGG GTTCCGGCGC
TTCGCCCACC TGGGCTATGT GCCGCTTGCC GGTGGGGACG CCGCGGTTCG GCGGCCCTGC
CGGATGGCGC TCGCCCATCT GCACGCCGCC GGAGTCCGCT GGGATCCCAC CCTGCCGCCG
GTCGTCGCCT GCCCGCAGCC GGAGCGGCGG GTGCTGACCC ACCAGCTGGC CAGCGGGCTG
GGCTGCGTGC CGACCTCCAG CATGGGGCGG CTCTTCGACG CGGTCAGCTC GCTGCTCGGC
ATCCGTCACG AGGTCGACTT CGAGGCGCAG GCGGCGATCG AGCTGGAGGC CCGGGCGCGC
ACCGCGGCCG GCGGCGGCGC GGACGACCGC GAACGCCACG CGTTCGCCCT GCGCGGGCAG
GGGCTGGGCA GGCCGCTGAT TATCGACCCG GCGCCGGTCA TCCGGGCGAT GGTGAGGGAT
CTGTCGGCCG GGCTCGCCGT GGACATCGCC GCGGTCCGTT TCCACACAGC CGTCGTGGCG
ATGATCGTGG ACCTCGCCCG GCGGGCACGC GGCGAGGTGG GCCTTGACCT GGTCGGACTC
ACCGGCGGGG TCTTCCAGAA CGCCGTTCTG ACGACGGCTG CATCCAGGGC ACTGCATGCG
GGGGGCTTCA CGGTGCTGCG GCATGCGCGG GTACCTCCGA ATGACGGGGG GATCGCTCTC
GGTCAGCTGC TCGTCGCCGC AGCGCGGGAG AAGACGCGGG AAAAGGGGTG A
|
|---|
| Protein sequence | MMADGTAGRM TRPVLSVGGA GEPSREAGPG GRARRRFVVQ GLVQGVGFRP FVHAAATELA
LTGWVRNDTG GVVAEVEGTP GAVEDFARRL RCDVPPLAMV ERVVTTELPP CGGSGFAIVR
SRPAAGGRTA AAPDVATCPD CLRELADPAD RRYRHPFITC TNCGPRFTII TDLPYDRPAT
TMARFAMCPV CEREYSDPAD RRFHAQPIAC PACGPRLEFV SPLGAPRTGE DALAAARRLL
ADGGVLAVKG VGGYHLACVA TDPTAVTTLR RRKRRGGKPF AVMVHDLAAA RALAHVDERE
AALLTDPARP IVLVRRRRDG RPALADSVAP DNPDLGLLLP YTPVHHLLLG LPGEPVPLHR
TVGTAGWPPL VMTSGNLGGE PIAAEDTDAL RRLAPLVDGW LRHDRPIRVP CDDSVVRVVD
GAPSPVRRSR GYAPLPVPLP FEVPPTLAVG ADLKNTCGLG AGRSAWLSGH IGDMDDLATL
RAFDAAERHL EHLTGVTPRQ LVTDAHPGYR SRQWAVRHAA GRPIRTVQHH HAHVAALMAE
HGLDGTRPVV GFAFDGTGYG PDRAVWGGEV LIADYRGFRR FAHLGYVPLA GGDAAVRRPC
RMALAHLHAA GVRWDPTLPP VVACPQPERR VLTHQLASGL GCVPTSSMGR LFDAVSSLLG
IRHEVDFEAQ AAIELEARAR TAAGGGADDR ERHAFALRGQ GLGRPLIIDP APVIRAMVRD
LSAGLAVDIA AVRFHTAVVA MIVDLARRAR GEVGLDLVGL TGGVFQNAVL TTAASRALHA
GGFTVLRHAR VPPNDGGIAL GQLLVAAARE KTREKG
|
|---|
| |