| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1736 |
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| Symbol | |
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| ID | 3906802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 2070744 |
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| End bp | 2072189 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637879074 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_480841 |
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| Protein GI | 86740441 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00343122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.149878 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTCC CGTCCTGGCC CGACCCCCGC CGCCCGGCGT CCGGTAACGG CGCGGGCAGG
CCCGGTCCGT TTCTTCCCTG GACCGGTGGC GGTGGGGGTC CGTCCGCGCC GACCGATCTT
CCGGGCCGTG CCTCGGGGTC GGCGGCCGAC GCCCTGCGTG TCCGGCTCCG GGACGGGCTG
CGGGCCGCGC TCGCCCGCCG GCTGCGCGCG GACGAGGAGG CAGGCTCCCC GCCGCTGACC
GCGCAGGCGC GGGAGGCGTT CGCGCTGTCC GTGCTTGTGG ATCTGACCGA GGCGCACACC
ACCGCCGAGC TGGCCCGCGG TGCGGGGGTC CTGTCACCCG AGGACGAGCA GCGCGTCCTC
CACGAGGTCC TCGCCGAAGT CCTCGGACTC GGCGGCCTCG AACCGTTGCT CGCCGACCCG
TCGATCGAGA ACATCAACAT CAACGGGGAT CGGGTGTTCA TCCGCCGGGC CGACGGCAGC
CGACACCGGC TACCAGCGAT CACCGACTCG GACGCCCAGC TGGTCGGCCT GATCCGGGAC
CTGGCCGCGC ACGCCGGGGT CGAGGAACGG CGCTGGGACC GCGGCGCCCC CATGGTCAAC
TTCCACCTGG CCGACAAGAG CCGCGTGTTC GCGGTCATGG CGGTCACCCA GCGGCCGTCA
GTGAGTATTC GCCGGCACCG GTTCCGCCAC GTCACCCTCG CGGCGCTGCG CGCGAACGGC
ACGATCGACT ACGGGCTGGA AGCGCTGCTG GCCGCGCTGG TAGCGGCGCG GAAGAACATC
GTGGTCGCCG GGGGCACGGC GATCGGGAAG ACCACGATGC TGCTCGCATT GGCCGACCAG
ATCCCACCGC ACGAGCGGCT GGTGACCGTC GAGGACGTCT ACGAGCTCGG GCTGGACACC
GACGCGCAGG CCCATCCGGA CGTGGTCGCG ATGCAGGTCC GCGAACCCAA CACCGAAGGC
GAAGGCGCGA TCTCCGCGTC CGACCTGGTC CGGGCCGCGC TGCGGATGTC TCCGGACCGG
GTGATCGTCG GGGAGGTCCG CGGGCCTGAG GTCATTCCGA TGCTCAACGC GATGTCCCAG
GGCAACGACG GTTCGATGAC CACGCTGCAC TCCTCGACCA GCCGCGGCGT CTTCACGAGG
TTGGCCAGCT ACGCCGTCCA GGGCCCGGAA CGACTTCCCG TCGAGGCGAC GAACCTGCTG
ATCGCCAGCG CGATCCACGT GGTGGTGCAC CTCGCCGAAC CCCGAGGCGA ACGCGGCCGA
CGGGTCGTGT CCAGCGTCCG GGAGGTCGTC GACGCCGACG GCACCCAGGT GATCACCAAC
GAGCTGTACC GACCGGGACC CGACCGGCGC GCCCTGCCGG CGGCACCGCC GACCGGGGAA
CTGCTCGACG ACCTGATCGA CGTGGGGTTC GACCCGGACG TGCTGTCCCG GGGGTGGTGG
GGATGA
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| Protein sequence | MTVPSWPDPR RPASGNGAGR PGPFLPWTGG GGGPSAPTDL PGRASGSAAD ALRVRLRDGL
RAALARRLRA DEEAGSPPLT AQAREAFALS VLVDLTEAHT TAELARGAGV LSPEDEQRVL
HEVLAEVLGL GGLEPLLADP SIENININGD RVFIRRADGS RHRLPAITDS DAQLVGLIRD
LAAHAGVEER RWDRGAPMVN FHLADKSRVF AVMAVTQRPS VSIRRHRFRH VTLAALRANG
TIDYGLEALL AALVAARKNI VVAGGTAIGK TTMLLALADQ IPPHERLVTV EDVYELGLDT
DAQAHPDVVA MQVREPNTEG EGAISASDLV RAALRMSPDR VIVGEVRGPE VIPMLNAMSQ
GNDGSMTTLH SSTSRGVFTR LASYAVQGPE RLPVEATNLL IASAIHVVVH LAEPRGERGR
RVVSSVREVV DADGTQVITN ELYRPGPDRR ALPAAPPTGE LLDDLIDVGF DPDVLSRGWW
G
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