| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1623 |
|---|
| Symbol | |
|---|
| ID | 3905902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 1950423 |
|---|
| End bp | 1951550 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637878961 |
|---|
| Product | peptidase M4, thermolysin |
|---|
| Protein accession | YP_480728 |
|---|
| Protein GI | 86740328 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3227] Zinc metalloprotease (elastase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTGCC CCCGCCACGC CCTGCCCTGC GCGGTCCCAC CCCACATCCT CGAACGCATT
GTCCGCAACG GCACCGAGGA GCAGCGTTCC CGGGCCCTGT CCACCCTGCT CCAGGACACC
TCTCATCGCA CCATCCGGGT GCACAACGCC CTGATGCGCT CGACGCGGCG CGGTGCCGTC
CCACCGCGCC CGGCGCCCGA GACCGGCCCG CGGCGTACCG TCAGCGACGC GGGCGGCACC
GAGATCCTGC CGGGTGCGAT GGTTCGCGAG GAGGGTGGCG CCGCGATCGA CGACGCGGCG
GTCAACGAGG CCTACGACGG CCTGGGCTCG ACGTTCGCGT TCTACTCCGA CGTCCTAGGC
CGGAGCTCCA TCGATGACGA GGGGATGGCT CTGCTCGCCA CCGTGCACTA CGGCGACCAC
TACGAGAACG CCTTCTGGAA CGGCCGCCAG ATGGTGTTCG GCGACGGCGA CGGCGAGCTG
TTCAAGCGTT TCACGGCGTC GCTCGACATC ATCGGTCATG AACTGACCCA TGGCGTCACC
GAGGACGAGG CGGCGCTGAT GTATGTGAAC CAGTCCGGCG CGCTCAATGA GTCGATCAGC
GACGTCTTCG GTTCCCTGGT GAAGCAGTAC GTCCGCGGCC AGACCGCCGA GCAGGCCGAC
TGGCTGATCG GCGACGAGCT GCTCACAGAC GCCGTCCAAG GCGTCGCGCT GCGGTCGATG
AAGGCCCCCG GGACCGCCTA CGACGATCCG GTACTCGGCG ACGACATCCA GCCGGACCAC
ATGGACCGCT ACGTCCGGAT GACCGCCGAC AACGGCGGCG TCCACATCAA CTCGGGCATC
CCGAACAAGG CGTTCTACCT CGCCGCGACG GCTCTCGGCG GATACGCCTG GGAGAAGGCC
GGCCGCATCT GGTACGAGAC CCTGCGCGCA CCGCAGATCC GGCCGAACAC GACGTTCCGT
GCATTCGCCT CGGTGACCGT GCACCAGGCC GGCCTGCTGT TCGGTGCGGA CGCGCGGAAG
GCCGTCTCCG AGGCGTGGCA GGCCGTCGGC ATCGTCGTCC GCGCAGCCGG GCAGGTCAGC
GCAGCCGGGC AGGTCAGCGC AGCCGGGCAG GTCAGCGCAG CCGGGTAA
|
|---|
| Protein sequence | MPCPRHALPC AVPPHILERI VRNGTEEQRS RALSTLLQDT SHRTIRVHNA LMRSTRRGAV
PPRPAPETGP RRTVSDAGGT EILPGAMVRE EGGAAIDDAA VNEAYDGLGS TFAFYSDVLG
RSSIDDEGMA LLATVHYGDH YENAFWNGRQ MVFGDGDGEL FKRFTASLDI IGHELTHGVT
EDEAALMYVN QSGALNESIS DVFGSLVKQY VRGQTAEQAD WLIGDELLTD AVQGVALRSM
KAPGTAYDDP VLGDDIQPDH MDRYVRMTAD NGGVHINSGI PNKAFYLAAT ALGGYAWEKA
GRIWYETLRA PQIRPNTTFR AFASVTVHQA GLLFGADARK AVSEAWQAVG IVVRAAGQVS
AAGQVSAAGQ VSAAG
|
|---|
| |