Gene Francci3_1376 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_1376 
Symbol 
ID3906578 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp1650989 
End bp1653577 
Gene Length2589 bp 
Protein Length862 aa 
Translation table11 
GC content70% 
IMG OID637878713 
Product(p)ppGpp synthetase I 
Protein accessionYP_480482 
Protein GI86740082 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.640463 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0959859 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCCGAGG CAGCGCCGGT GACCACCGGA GTTTCGCAGC CCGCCGTCAC TCCCTTCCGG 
GAGCCCCGGC CGGTGGGCGA TGCCGCGCGG GCCACCGCCG GATCGGCGGC GCGTGAGTCG
GCAGTCCACG GGCCGGCAGT CCACGGGCCG GCACAGCCGC CGGCTGCGGA TGGTGGCGAC
GTCCGCGGGC AGGAGCCGCC GGGTGGATCC CCGGGGGGGT CCGAGCTGGT CACCGCGGTC
GGCATGGGAC GGCGTCCCGA GGACGGTTCC CCGGTCGTCC CCCGGTTGGG GCACGAGTCG
CCGCCGCTGC CGCGTCGGGT ACGCGGTCGG CTCTCCCGCC TTGCGACGCA CCGGGCGACG
CCTCCCTCGG CTCTCGACCC GGTGCTGCGT GGGCTGCTCG CGAACCACCC GCGCGCCGAC
ATCGCCCAGG TGCAGCAGGC GTTCGAGGTC GCCGACGCCG CGCACGCCGG CCAGGTGCGC
TTCTCCGGCC ACCCGTACAT CACTCATCCG ATCGCGGTCG CGAGCATCCT CGCCGATCTG
GGGATGGACA CCGCGACGCT GTCCGCGGCG TTGCTGCACG ACACCCTCGA GGAGACGACG
CTTACCGTCG ATGCAATCCG GGACACCTTC GGTGACCATA TCGCGCTCAT CGTCGACGCG
GTCAGCAAGC TCAACCGGGT CAAGGTCGGC GAGGCGGCCC AGGCGGAGAC CATCCGCCGG
ATGGTCGTCG CGATGGCCCG CGACCCACGC GCGCTGGTGG TCAAGCTCGC CGACCGCCTG
CACAACATGC GTACCCTGCG CTTTCTGCCC GAGCACAAGC AGGAACGCAA GGCTCGGGAG
ACGCTCGAGG TCTACGCCCC GCTCGCCCAC CGGCTCGGCA TGAACTCGTT GAAGTGGGAG
CTGGAGGACC TCTCGTTCGC CGCGTTGTAT CCGAAACGGT ACGACGAGAT CGTCCGGCTG
GTCGCTGACC GGGCCCCGAG CCGGGACGTC TATCTGGCCG AGGTGATCGG GCAGGTACAG
GTCGGCCTGC GGGACGCGCG GATCAAGGCG GTCGTCTCCG GGCGGCCGAA GCACTATTAC
TCGATCTACC AGAAGATGGT GGTGCGCGGC CGTTCCTTCG ACGACATCTA TGATCTGGTC
GGCATCCGCG TCCTGGTCGA CTCGGTCCGG GACTGCTATG CCACGCTGGG TACCGTGCAC
GCGACCTGGA AGCCGATTCC CGGCCGGTTC AAGGACTACA TCGCGATGCC CAAGTTCAAC
ATGTACCAGT CCTTGCACAC GACGGTCATC GGTCCCGAGG GCAAACCGGT CGAGCTGCAG
ATCCGCACGC ACGCGATGCA CAACCGGGCC GAGTACGGCA TTGCCGCGCA CTGGAAGTAC
AAGGAGGACG GGGTTGCGGC CCGGCCCTCG GCGGGGACCC CGGAGGGCGG GCGGGCCGGT
CGGCGCAAGG GCGGACCCGA TGCGGACCTC ATGACCTGGC TGCGTCAGGT GCTCGACTGG
CAGCGGGAGA CCGCGGACCC GGGAGAGTTC CTCGACAGCC TGCGGTTCGC CGCCGAGACC
GACGAGGTTT TCGTCTTCAC CCCCAAGGGC GACGTCATCC CGCTGCCTGC CGGGTCGACC
TCGGTGGACT TCGCTTACGC GGTGCACACC GACATCGGCC ACCAGTGCGT CGGGGCCCGG
ATCAACGGCC GTCTCGCGGC CCTGGACACC CCGCTGGACA ACGGCGACGC GGTCGAGATC
TTCACCTCGC GGGCCCATTC GGCCGGCCCG AGCGAGGACT GGTTGATGTT CGTCCGTTCG
TCGCGGGCCA GGACGAAGAT CCGCCAGTGG CACGCCCGTG GGCGCCGGGA GGACGCGATC
GTCGCCGGCC GCGACGCGAT CGGCCGCGCG ATGCGCCGCC ACGGCCTGCC GCTGTCCCGC
CTGATGAGCG GGGACGCGCT GTTGAACCTG GCCAAGGACC TGCGCTACGC CGACGTGGCC
GCCCTCTACG CGGCCGTGGG GGAGAACCAC GTCAGCGCCC AGTCGGTGGT CTCGCGGCTG
CTCGTGGCCC TCGGCGGTCC GGAGGGGGCC GAGGAGGACG CGGGTGAGAC CGAGCTGCCG
ATCCGCACGC TGCGTCGCTC GACCGGGGAG GCGGGGGTGC TCGTCACCGG TGCTCCCGAC
GTGTGGACGA AGCTCGCCCG CTGCTGCACC CCCATGCCCG GCGACGAGAT CGCCGGTTTC
GTCACCCGGG GCAAGGGCGT GTCGGTCCAC CGGACGGACT GCTCCAACCT GTCGGGGCTG
CGCGGCGGGC CGCACGACCG CACGGTCCAG GTCGAGTGGG CGCCGTCGTC GGGCTCGGTG
TTCCTCGTCG TGATCCAGGT CGAGGCGATG GACCGTACCA AACTACTTTC GGATGTCACC
CGGGTACTGT CCGACCGGCA CGTGAACATC CTGTCGGCGT CGGTGGCCAC CACACGGGAT
CAGGTGGCGG TCAGCCGCTT CACGTTCGAG ATGGGAGACG CCAAGCATCT CCGGCACATC
CTGAGTGCGG TGCGTGCCAT CGAGGGCGTA TACGGCTGTT TCCGCGTTAC CTCGGGCGTA
CAGGTCTAA
 
Protein sequence
MPEAAPVTTG VSQPAVTPFR EPRPVGDAAR ATAGSAARES AVHGPAVHGP AQPPAADGGD 
VRGQEPPGGS PGGSELVTAV GMGRRPEDGS PVVPRLGHES PPLPRRVRGR LSRLATHRAT
PPSALDPVLR GLLANHPRAD IAQVQQAFEV ADAAHAGQVR FSGHPYITHP IAVASILADL
GMDTATLSAA LLHDTLEETT LTVDAIRDTF GDHIALIVDA VSKLNRVKVG EAAQAETIRR
MVVAMARDPR ALVVKLADRL HNMRTLRFLP EHKQERKARE TLEVYAPLAH RLGMNSLKWE
LEDLSFAALY PKRYDEIVRL VADRAPSRDV YLAEVIGQVQ VGLRDARIKA VVSGRPKHYY
SIYQKMVVRG RSFDDIYDLV GIRVLVDSVR DCYATLGTVH ATWKPIPGRF KDYIAMPKFN
MYQSLHTTVI GPEGKPVELQ IRTHAMHNRA EYGIAAHWKY KEDGVAARPS AGTPEGGRAG
RRKGGPDADL MTWLRQVLDW QRETADPGEF LDSLRFAAET DEVFVFTPKG DVIPLPAGST
SVDFAYAVHT DIGHQCVGAR INGRLAALDT PLDNGDAVEI FTSRAHSAGP SEDWLMFVRS
SRARTKIRQW HARGRREDAI VAGRDAIGRA MRRHGLPLSR LMSGDALLNL AKDLRYADVA
ALYAAVGENH VSAQSVVSRL LVALGGPEGA EEDAGETELP IRTLRRSTGE AGVLVTGAPD
VWTKLARCCT PMPGDEIAGF VTRGKGVSVH RTDCSNLSGL RGGPHDRTVQ VEWAPSSGSV
FLVVIQVEAM DRTKLLSDVT RVLSDRHVNI LSASVATTRD QVAVSRFTFE MGDAKHLRHI
LSAVRAIEGV YGCFRVTSGV QV