Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_1326 |
Symbol | |
ID | 3906598 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 1589995 |
End bp | 1591962 |
Gene Length | 1968 bp |
Protein Length | 655 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637878659 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_480432 |
Protein GI | 86740032 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0578519 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.326847 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCGCTTC TGTCCACGAT CAGTAGTCCG CAGGACGTCA AGCGCCTCGA CCACGAGGAG CTCGCCACCC TGGCGGCCGA GATCCGTGAT TTCCTCATTC ACGCAGTCGC GCGTACGGGA GGTCACCTCG GGCCGAATCT GGGGGCTGTC GAGCTGACGT TGGCAATACA TCGTGTGTTT GATTCGCCAT TCGACCGCAT CCTTTGGGAC ACCGGCCATC AGTCCTATGT GCACAAGATT CTGACCGGCC GGGCGGACGA TTTCTCCGGG CTGCGCCAGC GGGGTGGCCT TTCCGGCTAC CCCAGCCGGG CCGAGTCCGA GCACGACATC ATCGAGAATT CGCACGCCTC GACCGCCCTG TCCTACGCCG ACGGGCTGTC GCGTGCCTAC GCGCTGCGTG GTGAGGACCG GGCCGTCGTC GCCGTCGTCG GTGACGGCGC CCTGACCGGC GGGATGTGCT GGGAGGCGCT GAACAACATC GCCGCCGACG ACCGGCCCGT CGTCATCGTC GTCAACGACA ACGGCCGCTC CTACGCACCG ACGATCGGCG GCCTCGCCGA CCACCTCGCC GCGCTGCGGC TGGCGCCCGA GTACGAGCAG GTCCTCGACG TCGTCAAGCA GGTCCTCGGC CGCACCCCGC TGGTCGGCCC CCCGCTGTTC GACGCGCTGC ACGGCATCAA GAAGGGCATC AAAGACGTCG TCCAGCCGCA GGGCATGTTC GAGGACCTCG GCCTGAAGTA CGTCGGCCCG GTCGACGGCC ACGACGTCGT CGCGGTCGAG TCGGCCCTGC GCCGGGCTCG GGATTTCGGC GGGCCCGTCA TCGTCCACTG CGTGACCCGC AAGGGCTTCG GCTACCCGCC GGCGGAGCAG GACGACGCCG ACAACTTCCA CGGCGTCGGC ATCATCGACC CGGCGACCGG CAAGCCGGTG TCGACGTCGA AGACCATCAG CTGGACGAGC ATCTTCTCGG ACGAGATCGT GCAGATCGGT TCCGAGCGGC CCGACGTCGT CACGCTGACC GCCGCGATGC TCCAGCCGGT TGGTCTCGGC GCCTTCGCCA AGGCCTACCC GGACCGGGTG TTCGACGTCG GTATCGCCGA GCAGCACGCC GTCACCTCGG CCGCCGGGCT CGCGATGGGT GGGCTCAAGC CCGTCGTGTG TCTCTACGCC ACGTTCCTCA ACCGCGCGTT CGACCAGGTC CTGATGGACG TCGCCCTGCA CCGCCAGCCC GTGACGTTCG TGCTCGATCG GGCCGGCATC ACCGGGGAGG ACGGGGCGTC GCACAACGGC ATGTGGGACC TGTCGTTCCT GCAGGTCGTC CCGGGGCTCG CGATCGCCGC CCCGCGGGAC GCGCCGACCC TGCGGGCGGA GCTGCGTGAG GCCGTGGGTG ACACCGACGG CCCGACCGTC GTGCGTTTCC CCAAGGGCAA GGTCGCCGTG GACGTGCCGG CGATTGACAC GGTCGGCGGG GTGGACGTGC TCTACCGTTC GCCGAAGGTG GCCCAGCGCC GCGAGGTGCT GCTGGTCTCC ATCGGCGCGA TGGCCGCCAC CTGCCTGGAG GTCGCGGAGC GGGTCGCGAG CCAGGGCATC GGCATCACCG TTGTCGACCC GCGGTGGGTC AAGCCACTGG ACCCGGCGCT GATCGATCTT GCCCGCGCCC ACGACCTCGT CGTCACCGTC GAGGATAACG GCCGGGTCGG CGGGGTCGGG GCGGCGCTGG CCCAGCTGCT GCGCGACGCC GACGTTGACG TGCCCCTGCG GGACTTCGGC ATCGCCCAGC GCTTCCTCGA CCACGGCAAG CGGGACGAGG TCATGGCCGA GGTCGGGCTT GCCCCGCAGG ACCTCGCCCG CAAGGTCGTC GAGGCCGTCG CGAAGCGCCA GCCGGCGATC GAGGACGACC CGACCTCGCC CGGCGAAGCG GCCCCGGCGG GCGAGCGGGC CGGCGAGGCC ATCGGCGACC AGCGCTGA
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Protein sequence | MSLLSTISSP QDVKRLDHEE LATLAAEIRD FLIHAVARTG GHLGPNLGAV ELTLAIHRVF DSPFDRILWD TGHQSYVHKI LTGRADDFSG LRQRGGLSGY PSRAESEHDI IENSHASTAL SYADGLSRAY ALRGEDRAVV AVVGDGALTG GMCWEALNNI AADDRPVVIV VNDNGRSYAP TIGGLADHLA ALRLAPEYEQ VLDVVKQVLG RTPLVGPPLF DALHGIKKGI KDVVQPQGMF EDLGLKYVGP VDGHDVVAVE SALRRARDFG GPVIVHCVTR KGFGYPPAEQ DDADNFHGVG IIDPATGKPV STSKTISWTS IFSDEIVQIG SERPDVVTLT AAMLQPVGLG AFAKAYPDRV FDVGIAEQHA VTSAAGLAMG GLKPVVCLYA TFLNRAFDQV LMDVALHRQP VTFVLDRAGI TGEDGASHNG MWDLSFLQVV PGLAIAAPRD APTLRAELRE AVGDTDGPTV VRFPKGKVAV DVPAIDTVGG VDVLYRSPKV AQRREVLLVS IGAMAATCLE VAERVASQGI GITVVDPRWV KPLDPALIDL ARAHDLVVTV EDNGRVGGVG AALAQLLRDA DVDVPLRDFG IAQRFLDHGK RDEVMAEVGL APQDLARKVV EAVAKRQPAI EDDPTSPGEA APAGERAGEA IGDQR
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