| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1118 |
|---|
| Symbol | |
|---|
| ID | 3905460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1330564 |
|---|
| End bp | 1331979 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637878450 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_480227 |
|---|
| Protein GI | 86739827 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.951863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGATA CTGAGCGGAC CACCTGGCCG TCCGAGCCGG TACTGCAGGT GGCCCAGCCC
GCACCCGACC CGAGGCGTTG GTGGGCTCTC GCGGTCCTGC TCGTCGCCAC GTTCATGGAC
CTGCTTGACA ACAACATCGT CACGGTGGCT ATTCCGAACA TCCAGCAGCA TCTCGGGGCG
TCGCCAACGT CCATCCAGTG GATGAACGCG GGCTATACTC TCGCCTTCGC TGTGATGCTG
ATAACCGGAG GTCGACTGGG AGATATTTTC GGTCGCAAGC GAATGTTCTT GACCGGTGTC
GCCGGGTTTA TGGCGGCGTC CGGAATGTGC GCGATTGCGC AGAGTCCGGA ATTCCTCGTC
GGCGCCCGGG TGGTCCAGGG GGGCGCTGCG GCCGTCATGG TGCCGCAGGT ACTGGCGATC
ATCCACGTCA GCTTTGCTCG GGAAGAAGTC GGCAAGGTCG TCAGCCTATA CGCGGGCATC
GTGGGCCTGG CGATCGTCGC GGGACCGCTC GTCGGTGGTC TTCTGCTCCA GTGGAACCCG
TTCGGCCTCG AATGGCGCAG CATTTTTGCG GTCAACCTCC CCGTCGGCGC GGTAGCGTTG
GTGGCAGTGT CGGCGTGGAT GCGGGAATCC AGGTCCCCGA ATGCTCGCCG GCCCGACGGG
ATAGGGATGA TCCTCGTCGC CGTAGGGCTG CTGCTCGTGC TTTTTCCGCT TGTGCAGGGG
CGCGAGCTGG GCTGGCCGAT GTGGAGCATT GTCGCCATGG TAATCGCTGT CCCAGTGTTC
GCGCTGTTCC TACGGTATGA ACGGGAAAAG GTGCGCCGTG ACGATTCGCC ACTGTTGGCG
CTGAACCTCT TCAAAACTGG CAGCTTTTCT GTCGGTGTCG GCACGCAACT GTTGTTCAGC
TGCGTGCCGG CTGGATTCTT CATCACCTGG ACGGTTTATC TGCAGGGTGG TCTAGGCTGG
TCGGCACTGC ATACCGGTCT GACCACGATT CCATTCTCCG TCGCTGTTCC CGTGGCTGGC
GGACTCGCGG TACGCTACAT TTTTCCGAAG TATGGCCGTC GCTGCCTCAT GGTGGGAGTG
GCGGTGATGA CGTCGGGTGT TCTTTCCTAC GTGTGGACGG CGCATCACTT CGCCACCACC
GTGACAGCAT GGCATGCTGC CCCGTCTCTG CTGCTGATCG GTTCGGGCAT GGGCCTGCTG
GTCGCGCCAC TGACCGGGAT GATCCTGATC GATGTGCCGC CGCACGAAGC CGGCGCGGCC
TCCGGAATCA TCAACGCGAC CGGCCAGCTT GGCGCGGCAG TGGGCGTCGC GCTGATCGGT
GGGCTGTTCT TCTCCCAGGG CCTCGGCAAG TTTGCTGGTA AGCAGACTTT CGGCGTTGTG
TGGGGCTTCC AGTGGGGTTG CGTAGCGCGC TTCTGA
|
|---|
| Protein sequence | MVDTERTTWP SEPVLQVAQP APDPRRWWAL AVLLVATFMD LLDNNIVTVA IPNIQQHLGA
SPTSIQWMNA GYTLAFAVML ITGGRLGDIF GRKRMFLTGV AGFMAASGMC AIAQSPEFLV
GARVVQGGAA AVMVPQVLAI IHVSFAREEV GKVVSLYAGI VGLAIVAGPL VGGLLLQWNP
FGLEWRSIFA VNLPVGAVAL VAVSAWMRES RSPNARRPDG IGMILVAVGL LLVLFPLVQG
RELGWPMWSI VAMVIAVPVF ALFLRYEREK VRRDDSPLLA LNLFKTGSFS VGVGTQLLFS
CVPAGFFITW TVYLQGGLGW SALHTGLTTI PFSVAVPVAG GLAVRYIFPK YGRRCLMVGV
AVMTSGVLSY VWTAHHFATT VTAWHAAPSL LLIGSGMGLL VAPLTGMILI DVPPHEAGAA
SGIINATGQL GAAVGVALIG GLFFSQGLGK FAGKQTFGVV WGFQWGCVAR F
|
|---|
| |