| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1004 |
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| Symbol | |
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| ID | 3906691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 1195983 |
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| End bp | 1198160 |
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| Gene Length | 2178 bp |
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| Protein Length | 725 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637878337 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_480116 |
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| Protein GI | 86739716 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGGTCCC TGCCCCAGAC AGCCCGCCAG CAGGGCGTCG CGCGCTTCGC CCAGGCCTGG
GCCCGAGAGA TCCTCGGCGC CAGCTATCCG GCGATCGGCC TGATCGACGT CGAGCAGCGG
TTACGGGCGT TGAGCGACCG GCTCGTCGAC GCCCTGCTCG CCGAACCGTT CACGGCCGAC
CCTGCGGCCG CGGTCGGGGC TGCCGTCGTC GAGTACACCT TCGGCGCCGC GGACGCGTTG
GCCGGAACCA TCGAGATCTG TGGCACCAGA CTGCTCACCG ACCTACGACT CGGGACGGCC
GACGGGTACG GCGCCCGGCT GGCGGCGTTG CAGGGCGGGC TGGCCCAGGG ATACGCCCAT
GCGCTGCGGG AGCGGATCCT CGCCGGGCAG GACTCGATCC ATCGCGCGGC TCTGCACGCG
AGCGATGCCC GCTTCCGGAT GATCTTCACC GGCTCCGCGA TCGGAATCCT GATCAATGAT
GGAGGCGGAC GGATCATCGA CGCCAACGAC GCTTTTCTGC GGATGCTCGG AGTCGGCCCG
GGTCAGGTGC AGGGCAGGTC AATCGACGAG TTCGCGCATC CCGAGGACGC GAGGGAGCTC
CGGGAGGCCT ATGCCGCCCA GCGGACCGCC GGACCGGAGC ACATCCGGAT GGAGTGGCGG
TTCACCGGGA TCGGCGGGTC GGTGGTGTGG GCCGAGCTGA CCACGTCGTG TCTGCGCGAC
GACGACGGGC GGTGCCGTGC GCAGCTCTCC ATGATCGTGG ATGTGACTGA CCGGCATCTG
TTGCAGAACC AGCTGCGCCG CCAGGCGCGG CACGACCCGC TCACCGGCCT GCCGAACCGG
ACGGTACTCA TCGAACGGGT CCACGAACTG ATGGCCACGG GACCGGAACG TTGCATCGGG
CTGTGCTTCA TCGATCTGGA CGGATTCAAG ATGGTGAACG ACAGCCTCGG CCACGACGTC
GGCGACCGGT TGCTCGTCGC CGTCACGGAC CGGCTGCGTC GGGTGCTGTC CCCGGAGCAG
CTCCTGGTCA GGATGGGTGG TGACGAGTTC GTGATCCTTG TCGCCGACAC AGCCGGCACG
GCGGACGCCG TCGCCGTCGC CGAGACCGTG CTGGCGGCGC TGGCGAGCCC GCTGCGGGTG
GGTGACCACG CGCTGTCCAT CGGAGCGAGC ATCGGCATCG TCGAACGGCC CGTCGCCGGC
GGGGACTACG CCGATCTGCT ACGGGCCGCC GACATCACGC TCTACCGGGC GAAGGCGGAG
GGGAAGGGTC GCTGGGCCCT GTTCGAGGCG GAGCGAGGCG CCCGGCAGGT GACCCGGCAC
ACTCTGTCGA CCATGCTGCC CCGCGCCCTC GAACAGGACC AGTTCGTCGT CGAGTACCAG
CCGATCATCG CCCTCGGCGA CGGTGCGGGT GCCAGGATGG CCGCCGGGGC GATGGTCGGG
GTGGAGGCGC TGGTCCGCTG GCGGCATCCT GGCCTCGGTC TGCTGCCCCC CGATCTGTTT
ATCGGGATGG CGGAGGAGAC CGGGCAGATC GTGCCCCTCG GCCGGCGCGT GCTGGAGCTC
GCCTGTCGGC AGGCGCGGCA GTGGCAGGAG TGTCATCCGC ACGCCCTGTT CGTCAGCGTC
AACCTGGCCG CCCGGCAGAC CCGCGAGGCC GGCCTGGTGG AACAGGTCCG ACGCATTCTC
GACGAGACCG GGCTTTCCCC GGACCTGCTC CAGCTGGAAC TTACCGAGAG CGCCTTCATG
GGCACGGCCG ACGAGCCGCT GCGGGTCCTG CGCGGGCTCG CCGAGATGGG CGTGCGGATC
GCTATCGACG ACTTCGGCAC CGGTTATTCC AACCTCGCCT ACCTGCGTCG GCTGCCGGTG
CACACGCTCA AGCTCGCCGG ACCGTTCGTC GAGGGCTTCC ACTCGGCGCG GGACGCCGAC
CCGGGGGATG AGGAGATCGT GCAGACGCTG GTCACGTTGG CCCACACCCT GCGCCTGACG
GTGACCGCCG AGGGCGTCGA GACCCCGATG CAGGCCGAGC GGCTGCGCGC GGCCGCCTGC
GACAGCGCGC AGGGCTTTCT CTTCGCGCCG CCGCTGACGG CTGAGGAGAT CACCCAGAGG
ATCCTCACCC GGTCCGCTGG CTCGGACCGA ACATCTTCGA GCCCCACGCA GGCAGCGCGG
GCGGCATGGG CGCGCTGA
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| Protein sequence | MRSLPQTARQ QGVARFAQAW AREILGASYP AIGLIDVEQR LRALSDRLVD ALLAEPFTAD
PAAAVGAAVV EYTFGAADAL AGTIEICGTR LLTDLRLGTA DGYGARLAAL QGGLAQGYAH
ALRERILAGQ DSIHRAALHA SDARFRMIFT GSAIGILIND GGGRIIDAND AFLRMLGVGP
GQVQGRSIDE FAHPEDAREL REAYAAQRTA GPEHIRMEWR FTGIGGSVVW AELTTSCLRD
DDGRCRAQLS MIVDVTDRHL LQNQLRRQAR HDPLTGLPNR TVLIERVHEL MATGPERCIG
LCFIDLDGFK MVNDSLGHDV GDRLLVAVTD RLRRVLSPEQ LLVRMGGDEF VILVADTAGT
ADAVAVAETV LAALASPLRV GDHALSIGAS IGIVERPVAG GDYADLLRAA DITLYRAKAE
GKGRWALFEA ERGARQVTRH TLSTMLPRAL EQDQFVVEYQ PIIALGDGAG ARMAAGAMVG
VEALVRWRHP GLGLLPPDLF IGMAEETGQI VPLGRRVLEL ACRQARQWQE CHPHALFVSV
NLAARQTREA GLVEQVRRIL DETGLSPDLL QLELTESAFM GTADEPLRVL RGLAEMGVRI
AIDDFGTGYS NLAYLRRLPV HTLKLAGPFV EGFHSARDAD PGDEEIVQTL VTLAHTLRLT
VTAEGVETPM QAERLRAAAC DSAQGFLFAP PLTAEEITQR ILTRSAGSDR TSSSPTQAAR
AAWAR
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