| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0862 |
|---|
| Symbol | |
|---|
| ID | 3903845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 1004471 |
|---|
| End bp | 1006141 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637878195 |
|---|
| Product | assimilatory nitrate reductase (NADH) beta subunit |
|---|
| Protein accession | YP_479975 |
|---|
| Protein GI | 86739575 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1251] NAD(P)H-nitrite reductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0636126 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGCT CCCGGATGAT CAGCGAGCTT CGTTCCCGAG ATCCCAACCT GATCATCACC
GTGTTCGGGG AGGAGCCGCA TCCCGCCTAC AACCGCATCC TGCTGTCGAA CGTCCTGGCA
GGAAAGGCGG ATCTGGCCGA CATCACCCTG GTCGACCATG CGGCGTCCGG CGACAGCGGT
GACGGCACGC CCCCGCGCGC CCTGGTCGAC GTCCGGGCCG GCGTGGTGGC GCACCACATC
GACCGTACGC GTCGCACCGT CACGGCCGAC GACGGCAGCG TCGTCGCCTA CGACGTACTC
ATCCTCGCCA CCGGGAGCCG GGCGTGGCTG CCACCAATCG AGGGACTGAC CCGACCGGAT
GGGACGCTGC TACCCGGAGT GGCGGCGTTC CGCACCCTCG ACGACTGCCG GCACATCCTC
ACCCAGTCCG AACGGGCCAC CCGCGCGGTG GTACTCGGCG GCGGCCTACT CGGCCTGGAG
GCGGCCCGCG GCCTGGTCCG CCGCGGTCTG GACACGACGG TCCTGCACGC TGCGGGTCAC
CTGATGAACC GCCAGCTCGA CCGGCGGGCC GGACAGGTGC TGGTCCGGAC GCTGGCCGGG
CTCGGGGTGC GGTCCCGGCT CGAGGCCAGG GTCGTCCGGA TCCATGGCGA CGAGCGGCTC
GCCGGCGTGG AGCTGGCCGG CGACGAGGTG CTCGACGCCG ATCTGCTGGT GGTCTCGACC
GGCGTCGTGG CGGTGACCGA CCTCGCCGCG GCGGCCGGCC TGCCGGTCGA AGCCGGGATC
GTGGTGGACG ATCAGATGCG CTCCCCCGCC GATCCGGCCG TGTTCGCGGT CGGTGACTGC
GCGCAGCACG ACGGGACGGT GCAGGGGCTG GTGGCGCCGG CGTGGGACCA GGTCCGGGTG
GTGGCCGACG TTGTCACCGC CGCCGACCCC GCCGCGCGCT ACAGCGGCGC CCGACCCGTG
ACCAGGCTCA AGGCGTCGGG AGTGGATCTC GCCACCATGG GCGAGGTCGA CGTGGACGAG
TTCGACGAGG ACGCCGAGGT GCTGCAGTTC GTCGATGTCA CCCGGGGCAC CTTCAAGAAG
CTGGTGATCC GCGGGGACCG ACTGGTGGGC GCGATCATGC TCGGTGACAA CCCGACGGTG
GGGACCGTGA CGCAGCTGTT CGACCGGCAG GCTCCGGTGC CGGCCGACCG GCGCAGCCTG
CTGTTCCCGA CCCGGACCGA GGTCACCGTC ACCGACAGTC CGGCGACCCT GCCCGACCGG
GTCACCATCT GCCGGTGCAA CAACGTGACC AAGGGCGGGA TCACCCGCTG CTGGTTGGAC
GGGGCACGTG ACCTGCCGGC GATCGTCACC GGTACCCGGG CGACGACCGG ATGCGGCACC
TGTCGGGACG CCGTCGCGGG CATCGTCGAG TGGCTGGCCG CGGCCGACCC GGACCCGTCG
GCCGCGGCAG GCGACAACTG CGCGGCCGGT CTGGAGGAAT CTCCTCAGAC CGACCGGCGC
AGCAGCGGCG GGTGCAGCGC GACCGCCGAG CCACGCCGAT ACAGCTCGGC GGGCCGACCG
CCACCGCGCG GGGAGGTGCG CTGGCCCAGC GGTACGACGA ATCCCGGCGT GGACAGCACC
TTGCGGCGGA AGTTCGGCGG ATCCAACGCG ACGCCCCACG CGGCCTCGTA G
|
|---|
| Protein sequence | MAGSRMISEL RSRDPNLIIT VFGEEPHPAY NRILLSNVLA GKADLADITL VDHAASGDSG
DGTPPRALVD VRAGVVAHHI DRTRRTVTAD DGSVVAYDVL ILATGSRAWL PPIEGLTRPD
GTLLPGVAAF RTLDDCRHIL TQSERATRAV VLGGGLLGLE AARGLVRRGL DTTVLHAAGH
LMNRQLDRRA GQVLVRTLAG LGVRSRLEAR VVRIHGDERL AGVELAGDEV LDADLLVVST
GVVAVTDLAA AAGLPVEAGI VVDDQMRSPA DPAVFAVGDC AQHDGTVQGL VAPAWDQVRV
VADVVTAADP AARYSGARPV TRLKASGVDL ATMGEVDVDE FDEDAEVLQF VDVTRGTFKK
LVIRGDRLVG AIMLGDNPTV GTVTQLFDRQ APVPADRRSL LFPTRTEVTV TDSPATLPDR
VTICRCNNVT KGGITRCWLD GARDLPAIVT GTRATTGCGT CRDAVAGIVE WLAAADPDPS
AAAGDNCAAG LEESPQTDRR SSGGCSATAE PRRYSSAGRP PPRGEVRWPS GTTNPGVDST
LRRKFGGSNA TPHAAS
|
|---|
| |