| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0828 |
|---|
| Symbol | |
|---|
| ID | 3905105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 966418 |
|---|
| End bp | 967095 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637878161 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_479941 |
|---|
| Protein GI | 86739541 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACACGAA GCCGTCGTAC CGAGCAGACG GCTGACACCC GTCAGGCCCT GATCTCCGCC
GCCCGCCGTC GGTTCGCCGA ACAGGGGTTC GCCTCCACCG GCACCGAGGA GATCGTCGCC
GACGCGCAGG TCACCCGCGG CGCGCTTTAT CACCACTTCC GCGACAAGGC CGCACTGTTT
CGCACCGTGA TGGAACAGGT CGCGACGGAG GTGGCCGAAC AGCTCGTCGC CGGTGAACTT
GCCCGGGACG CGGAGCTTCC CAGCGACGCC TGGACGCAGC TCCGGTCCGG GTTCCAGTCC
CTGCTCGACA TCTCCACCGC GGACAGCGAC TTCCAGCGCA TTGTCCTCGT CGACGGTCCG
GCCGTGCTGG GCAACGACGC CTGGGATGCG CTCGTTGAGA AGCACGGCTA CCGGCTGCTC
TCGGAGTGGC TGGAGCGCGC GATGGCCGAG GACCGCATCG ACCCGCTGCC AGTGGTCCCG
CTGACCAGGC TGGTCGCCGC CCTGCTGTCG GAGGCGAGCA TCTACACCGC CGGCGCCGCG
GACCCGGACA CCGCCCGCCT CGAGGTCGGC ACCGTGCTCG ACCGGCTGCT GCGCGGGCTC
GGCCGCGGTG GCGATCTCGC CGAGCAGCCG CCGGTCAGTG CCGACGGCGG CGCCGGCTCC
CGCGGGACCG CCGGCTAA
|
|---|
| Protein sequence | MTRSRRTEQT ADTRQALISA ARRRFAEQGF ASTGTEEIVA DAQVTRGALY HHFRDKAALF
RTVMEQVATE VAEQLVAGEL ARDAELPSDA WTQLRSGFQS LLDISTADSD FQRIVLVDGP
AVLGNDAWDA LVEKHGYRLL SEWLERAMAE DRIDPLPVVP LTRLVAALLS EASIYTAGAA
DPDTARLEVG TVLDRLLRGL GRGGDLAEQP PVSADGGAGS RGTAG
|
|---|
| |