Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_0678 |
Symbol | sdhB |
ID | 3905266 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 774693 |
End bp | 775391 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637878011 |
Product | succinate dehydrogenase iron-sulfur subunit |
Protein accession | YP_479791 |
Protein GI | 86739391 |
COG category | [C] Energy production and conversion |
COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000352148 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0375147 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGTCA CCCTCAAGAT CCGTCGCTAC GACCCGGAGA CGGTCGACGA GGCGCACTGG GAGAGCTACC AGGTGCCGTT CGATCCGAGC GACCGGCTGC TCGACGCAAT CATGTGGGTC AAGTGGAACC TCGACGGGAC GCTCGCCTTC CGCCGGTCCT GCGCGCACGG GGTGTGCGGC TCGGATGCGA TGCGGGTCAA CGGCGCCAAC CGCCTCGCCT GCAAGGTGCT GGTGAAGGAC CTCGGCTCGG AGATCACCAT CGAACCGATC AAAGGTCTGC CGGTAGAGAA GGACCTCATC GTCGACATGG AACCGTTCTT CGACGCGTTC CGGGCAGTGA AGCCCTACCT GATCACGGAC GACCACGAGC CGACCCGCGA GCGGCTGCAG TCCACCGAGG ACCGGGCCCG CTTCGACGAC ACGACCAAGT GCATCATGTG CGCGGCGTGC ACCACCGCGT GCCCGGTGTT CTGGACCGAC GGCGACTACT TCGGCCCGCA GGCGATCGTC GCGGCCCACC GGTTCATCTT CGACAGCCGT GACTCCGGTA CCGACGAGCG CCTGGAGATC CTCAACGAAC GCGAGGGGGT CTGGCGTTGC CGGACCACCT TCAACTGCAC CGACGCCTGT CCACGCGGCA TCCAGGTGAC CAAGGCCATC CAGGAAGTCA AGCGGGCGCT GTTGTTCCGC CGCGTCTGA
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Protein sequence | MTVTLKIRRY DPETVDEAHW ESYQVPFDPS DRLLDAIMWV KWNLDGTLAF RRSCAHGVCG SDAMRVNGAN RLACKVLVKD LGSEITIEPI KGLPVEKDLI VDMEPFFDAF RAVKPYLITD DHEPTRERLQ STEDRARFDD TTKCIMCAAC TTACPVFWTD GDYFGPQAIV AAHRFIFDSR DSGTDERLEI LNEREGVWRC RTTFNCTDAC PRGIQVTKAI QEVKRALLFR RV
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