Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_0244 |
Symbol | |
ID | 3903652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 283431 |
End bp | 284636 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 637877572 |
Product | putative sigma factor |
Protein accession | YP_479361 |
Protein GI | 86738961 |
COG category | [K] Transcription |
COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCTCGAG GTGCGCCCGT TCCTGACCTC ACCGCCCACC ATCACAGAGT GACCTCTCAG ATAAACGAGG CCCTGCTCCG GAGCCTCACC CCGAGCGTGC TAGGGATCCT CGTCCGCCGC GGAGCCGACT TCGCGGCGGC CGAGGACGCC ATGCAGGACG CGCTGGTCGA GGCGGTCCGC GTCTGGCCGG CCGACCCGCC GCGGGACCCG AAGGGCTGGC TGGTCACCGT GGCCTGGCGC CGGTTCCTCG ACGCGACCCG GGCGGACGCC GCCCGCCGCC GGCGTGAGGA CCTCGTCAAC GAGGAGCCGG CGCCCGGGCC CGCGCCCACG GTGGACGACA CGCTCCAGCT CTACTTCCTG TGCGCCCACC CCTCGCTGAC GCCGTCGTCC GCGGTCGCGC TCACGCTGCG CGCCGTCGGC GGGCTGACCA CCCGCCAGAT CGCCCAGGCC TACCTGGTGC CCGAGGCGAC CATGGCGCAG CGCATCAGCC GTGCCAAGCG CACCATCTCC GGCGTGCGGT TCGGCCAGCC CGGCGACGTC GCCACCGTGC TGCGCGTCCT CTACTTGGTC TTCAACGAGG GCTACTCCGG CGACGTCGAC CTTGCCGCCG AGTCCATCCG GCTCACCCGG CAGCTCGCGG CCGCGGTCGA CCATCCCGAG GTGGCGGGGC TGCTCGCCCT CATGCTGCTC CACCACGCCC GGCGCGTCAC CCGGACCGCG CCCAACGGCA GCCTGGTGCC GCTCGCCGAG CAGGACCGCA GCCGGTGGGA CACTGAGCTG ATCGCCGAGG GCGTCAAGAT CCTGCAGGCG GCCCTCGCCC GCGACCGGCT GGGCGAGTTC CAGGCCCAGG CCGCCATCGC GGCACTCCAC GCTGACGCGC CCACCGCCGA GGAGACTGAC TGGGTCCAGA TCGTCGAGTG GTACGACGAG CTCGCGCGTC TGACCGACAG CCCGGTCGTC CGGCTCAACC GCGCAGTGGC CGTCGGCGAG GCCGACGGAC CGCGCGCCGG GCTGGCGGCG CTCGCGGCGC TGAACGACTC ACTGCCCCGC CACGCCGCGG TGGCGGCGTA CCTCCACGAG CGCGACGGCG ACCTGGCGAC GGCGGCACGG CTGTACGCCG AGGCGGCCCA CAAGGCACCC AACCTCGCCG AGCGCGATTA CCTGACGCGC CAGGCCGCCC GGCTCAACGC CCGCCGGTGT CGCTGA
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Protein sequence | MARGAPVPDL TAHHHRVTSQ INEALLRSLT PSVLGILVRR GADFAAAEDA MQDALVEAVR VWPADPPRDP KGWLVTVAWR RFLDATRADA ARRRREDLVN EEPAPGPAPT VDDTLQLYFL CAHPSLTPSS AVALTLRAVG GLTTRQIAQA YLVPEATMAQ RISRAKRTIS GVRFGQPGDV ATVLRVLYLV FNEGYSGDVD LAAESIRLTR QLAAAVDHPE VAGLLALMLL HHARRVTRTA PNGSLVPLAE QDRSRWDTEL IAEGVKILQA ALARDRLGEF QAQAAIAALH ADAPTAEETD WVQIVEWYDE LARLTDSPVV RLNRAVAVGE ADGPRAGLAA LAALNDSLPR HAAVAAYLHE RDGDLATAAR LYAEAAHKAP NLAERDYLTR QAARLNARRC R
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