| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0174 |
|---|
| Symbol | |
|---|
| ID | 3903143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 204685 |
|---|
| End bp | 205857 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637877506 |
|---|
| Product | serine phosphatase |
|---|
| Protein accession | YP_479295 |
|---|
| Protein GI | 86738895 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.872629 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAGAC GTCGTTCAGG CGCTGGCGGA CTCGGCGGAC TCGGCGGACT CGGCAGGGTG
GAGGGGCCCG GCGGATTAGA GGGGCTCGGC GGGGTGGAGG ACGTCCGTCC CCTCATAGCC
GGAACGCTCG TCCTCGTCAC GGTCGTCATC CTCGACGCGA CGCCCGGGCT GATCCTGGTC
GGGTACTTCG GTCTCGGGCC ACTGATCATC GCGGCGGCCA GTCCACCCCG GGTCACCGCC
GCGGTCGGAG CGCTGGCAGT GATCGCGGCG CTCCTCTCCG GCTTCTGGGA TCATTGGTTC
GGGACCGGTC CGCATCTCGC CGCAACCACG CTGGTCGCCC TCCAGTCCGT GATCGCGGTC
TGCATCTGCG TGTGCCGGGA ACGGCAACGC TCACAACTGC ACCAGGTCAA AGCGGTCGCC
GAGGTCGCGC AGCGGGCACT GCTACCGGCG GTCCCGAGCC GGCTCAACGG GGCCGGTTTC
GCGGCTCGGT ACCTCTCCGC CGCCCAGGAG GCGTCGGTGG GTGGCGATCT CTACGAGGTC
GTCTCCACCT CGCAGAGCAT CCGGATGATC ATCGGCGATG TCCGCGGCAA GGGCCTGCCC
GCGGTCCGGC TGGCCTCGAT AGTGCTCGGT GCCTTCCGCG AGGCGGCAGT GACCTGGCTC
GACCCGGAAC AGGTGGCCGC CGCCTGCGCC CGCGCGGTGG GTCGGGAGGC CGAACCCGAG
GACTTCGTGA CGGCGCTCAT CGTCGACATC CACCCGGACG GTCGGCTGGG CCTGTGCTCG
GCCGGGCATC ACCCGCCACG ACTGGTCTCG GCGGACGAGT GCACCACGCT GGAACTGAAG
TCGCCGAGTC CGCCGCTCGG GCTGGCCGAG CGTTTCTCCG TCACGATGGC GAGCTGGGCG
GTCGGCGATC GGATGCTGCT GTTCACCGAC GGTCTCACCG AGGCCCGGGA CGGCCGGGGG
CGGTTCTTCC CTCTGGACGA TCATCTGGAC CTGCTGCGGG GCGGCAGCCA GGACGACGCG
CTCGACCGTC TCGCCGGGGC TCTGCGCGCC CACGTGGATG GCAGGCTGCA GGACGACCTC
GCGGTGCTGC TGGCCGAGCG GGAGGCGGGA CCGAGTGGCG GGATGGGAGC CGGGACAGGA
GCCGGGACAG GAGTCGGCGT CCTGAGCTCT TGA
|
|---|
| Protein sequence | MRRRRSGAGG LGGLGGLGRV EGPGGLEGLG GVEDVRPLIA GTLVLVTVVI LDATPGLILV
GYFGLGPLII AAASPPRVTA AVGALAVIAA LLSGFWDHWF GTGPHLAATT LVALQSVIAV
CICVCRERQR SQLHQVKAVA EVAQRALLPA VPSRLNGAGF AARYLSAAQE ASVGGDLYEV
VSTSQSIRMI IGDVRGKGLP AVRLASIVLG AFREAAVTWL DPEQVAAACA RAVGREAEPE
DFVTALIVDI HPDGRLGLCS AGHHPPRLVS ADECTTLELK SPSPPLGLAE RFSVTMASWA
VGDRMLLFTD GLTEARDGRG RFFPLDDHLD LLRGGSQDDA LDRLAGALRA HVDGRLQDDL
AVLLAEREAG PSGGMGAGTG AGTGVGVLSS
|
|---|
| |