Gene Fnod_1494 details

Gene Information

• Locus tag: Fnod_1494
• ID: 5452274
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Fervidobacterium nodosum Rt17-B1
• Kingdom: Bacteria
• Replicon accession: NC_009718
• Strand: -
• Start bp: 1622396
• End bp: 1624216
• Gene Length: 1821 bp
• Protein Length: 606 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 640875267
• Product: polysaccharide biosynthesis protein CapD
• Protein accession: YP_001410994
• Protein GI: 154250169
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1086] Predicted nucleoside-diphosphate sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAAGTCTA AAAAAATTGA TAATTTTCTA AAACTCTTTT CGAGTAGAAA TTTTTTGCTC 
TTTCTAATAG ATATCACGCT TTTAACATTA GCTGGCTTGA ATGCATTGTT TGTAAGATTT 
GGATTCGACT TTTTAGAAAT GTCAAAGTAT TCATCCGGGG TTTTTGTCCT TGTAATAATA 
ACAATTATAT CGAACCTTTT AAATGGTACT TACCGCATTG TCTGGCGTTA TGCAACACCA 
AAAGATTTGA TTGTTCTACT AAGAGGTCTG TTTATTGGTT ATGCTTTCAC ACTAATATTC 
ATACATTTCA CAAGATTGGT CGTTCTTCCA CGTTCCGTTG GAATGCTTAC CTTCCTTGGT 
AGCTATTTTC TCCTATTAAG TGCAAGGATA ATTTATCAAT ATCTGTTAAG TTGGAAACGA 
AAAAGCGAAA AAAGAATAGC TATAATAGGT GCCGGTGATG CTGGTGTCAT ATTATTAAAC 
GAAATAAAAA GAACAAACTA CGGTACCGTT GTCGCCTTTT TCGATGACGA TACACAAAAA 
ATAGGAAAAT ACGTTGCCGG TGTAAAGGTT TTGGACTCTG TAGACTCAAT AAATAATTAC 
ATCGATAAGC TTGAAATTGA TGAAATACTA ATAGCTATAC CCTCTGCTTC AAAACAAGTC 
ATGAGCAGAA TAATCTCAAC AATAGATACA GAAAAAGTTA AACTAAAAAC TTTCCCTTCA 
ATAACCGAAT TTTTAGATAG AAATCCAACA ATAACAGATT TACGTGAAAT TTCCTTACAA 
GATATTGTTG GAAGGGAACC AGTAAGTGTT GACATAGACT CTATAAGCAA ATACTTAACA 
GGAAAAACAA TTCTAATAAC CGGCGCCGGT GGTAGTATCG GTTCTGAAAT TTCAAGGCAA 
GTTTGTAAGT TTTCTCCAAA AAAAGTAGTC TTAGTTGGGC GAGGAGAAAA TAGCATATAT 
GAAATTTACA ACGAATTGAA AGAGAAATAT TACGAACTCG ATATAGTGCC AATAATATCA 
GACGTTACAG ACAAAAACAT GATGGAAAAA ATTTTCAAAA CTCATAGGCC GGATATTGTC 
TTCCACGCCG CTGCACACAA ACATGTATTT TTTATGCAAA ACAATCTTTA CGAAGCACTT 
AGAGTAAATG TATTAGGCAC CATAAACCTT GCAAAATTAT CTTGCAACTA CAATGTTGAA 
AAATTCGTGT TTATATCCAC CGACAAAGCA GTTCATCCAA CTTCATATAT GGGTACAAGT 
AAAAGATTAG CGGAACTTTA CTTACTCTCA ATACCAGATA CATGCAAGAC AGATTTTTCG 
ATAGTAAGAT TCGGAAATGT CATAGGCAGC AGAGGCAGTG TGCTTTGGAA ATTCAAAAAA 
CAAATAGAAA ACGATGAACC TGTAACAATA ACTGATCCAA GAATGAAACG TTATTGGATG 
AGCATCCCAG AAGCCGTGTC ACTCGTAATT CAAGCGGGAG CTTTATCCAC AAATAGAGAA 
CTATACGTCC TTGATATGGG AGAGCAGATT CCCGTTGAAG AAGTAGCAAA AGCCCTTGCC 
AAGATTATGG GAAAACAAAA TATAAAAATA AAATACACGG GCGCAATTCC AGGAGAAAAG 
CTTGAGGAAG AACTTTTCTA CGAATACGAA AAACCAGAAA AAACACAACA TCCAAAAATA 
ATGCGTGTAG AATACAATAA TTTAAAAAAA ATACTCCCTG AAGAATTTGA AAACAAAATC 
TTAGAAATTA TGAACAAATA CATAGAAGGC CATGAAAGAG AAGCAGAAAA TATGCTTTAC 
GAAATATTAG AAATAAACTA A 

 

Protein sequence

MKSKKIDNFL KLFSSRNFLL FLIDITLLTL AGLNALFVRF GFDFLEMSKY SSGVFVLVII 
TIISNLLNGT YRIVWRYATP KDLIVLLRGL FIGYAFTLIF IHFTRLVVLP RSVGMLTFLG 
SYFLLLSARI IYQYLLSWKR KSEKRIAIIG AGDAGVILLN EIKRTNYGTV VAFFDDDTQK 
IGKYVAGVKV LDSVDSINNY IDKLEIDEIL IAIPSASKQV MSRIISTIDT EKVKLKTFPS 
ITEFLDRNPT ITDLREISLQ DIVGREPVSV DIDSISKYLT GKTILITGAG GSIGSEISRQ 
VCKFSPKKVV LVGRGENSIY EIYNELKEKY YELDIVPIIS DVTDKNMMEK IFKTHRPDIV 
FHAAAHKHVF FMQNNLYEAL RVNVLGTINL AKLSCNYNVE KFVFISTDKA VHPTSYMGTS 
KRLAELYLLS IPDTCKTDFS IVRFGNVIGS RGSVLWKFKK QIENDEPVTI TDPRMKRYWM 
SIPEAVSLVI QAGALSTNRE LYVLDMGEQI PVEEVAKALA KIMGKQNIKI KYTGAIPGEK 
LEEELFYEYE KPEKTQHPKI MRVEYNNLKK ILPEEFENKI LEIMNKYIEG HEREAENMLY 
EILEIN