Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fnod_1326 |
Symbol | |
ID | 5452277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Fervidobacterium nodosum Rt17-B1 |
Kingdom | Bacteria |
Replicon accession | NC_009718 |
Strand | - |
Start bp | 1430734 |
End bp | 1431621 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640875102 |
Product | spermidine synthase |
Protein accession | YP_001410830 |
Protein GI | 154250005 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | [TIGR00417] spermidine synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCTGATA AAGGACTCGA AAAAGAATTA AAACCCGGTA GACATATGTT GTATATGGAA TGGTATTCGA AAGATCCCGG TGGATTATTC ATGAAAGTTA ATAGATATTT GTACTCAGCC CAGAGTCAGT ATCAAAGAAT AGATATATTT GAAGCACCAT TTTATGGAAG AGTGTTTTCA CTAGATGGTA TTACAATGAC AACGGAAATC GATGAATTCA TGTACCATGA AATGCTCGTT CACGTACCAA TGTTTATGCA TCCAAATCCA AAGAAAGTCC TTGTTATCGG TGGCGGTGAC GGTGGAAGCA TAAGAGAAGT TTTAAAACAC CCATCCGTTG AAAAAGCGGT AATGTGTGAG ATTGACGAAC TTGTTGTAAG AGCTGCTATG GAATATCTCC CATACACCGC ATCAAAGTTA ACAGACCCAA GAGTAGAGCT TGTTTACGAA GACGGTGCGA AGTTCGTAAG GCAATTTAAA AACGAGTTTG ACGTTATTAT AATTGACTCA ACCGACCCAA CAGCAGGGGA AGGTGGGCAC CTATTCACGC TTGACTTTTA CAAGGCATGT AACGAAGCTT TGAAAGAAGA TGGTATTTTG TGTGCTCAAA CTGAAGGCAT GACATACGAC TACGAATGGG GTTCAACTGC TTACAAAAGA ATTAAGGCAA ACTTCCCGCT TGTAAAGATG TACCTTGGCT TTATGCCAAC GTATCCCGGA GGTATTTGGT CTTACACTTA CGCTTCAAAA GCAGGAATTG ACCCAGTTAA AGATTTCAAT CCAGATAAAG TAAAAAATTT CAGAGAACCG TTAAGATATT ACAATGAAGA AATACACATA GCTGCATTTG CACTTCCGAA TTTCGTAAAA AAATACATAG AAGAATAA
|
Protein sequence | MADKGLEKEL KPGRHMLYME WYSKDPGGLF MKVNRYLYSA QSQYQRIDIF EAPFYGRVFS LDGITMTTEI DEFMYHEMLV HVPMFMHPNP KKVLVIGGGD GGSIREVLKH PSVEKAVMCE IDELVVRAAM EYLPYTASKL TDPRVELVYE DGAKFVRQFK NEFDVIIIDS TDPTAGEGGH LFTLDFYKAC NEALKEDGIL CAQTEGMTYD YEWGSTAYKR IKANFPLVKM YLGFMPTYPG GIWSYTYASK AGIDPVKDFN PDKVKNFREP LRYYNEEIHI AAFALPNFVK KYIEE
|
| |