Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fnod_1111 |
Symbol | rpsD |
ID | 5452242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Fervidobacterium nodosum Rt17-B1 |
Kingdom | Bacteria |
Replicon accession | NC_009718 |
Strand | - |
Start bp | 1210110 |
End bp | 1210739 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 640874879 |
Product | 30S ribosomal protein S4 |
Protein accession | YP_001410615 |
Protein GI | 154249790 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0522] Ribosomal protein S4 and related proteins |
TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000000499385 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACGAA ACACAGGGCC TTTGTGCAAA TTGTGTAGAA GAGAAGGAAT GAAATTGTAC CTTAAGGGTG AAAGATGCTT CAGCGAGAAA TGTCCATTTG ACAAGAGACC ATTCGCACCT GGACAACACG GTAGAGAAAA GAAAAAACTA ACACAATATG CTCTCCAACT CAGAGCTAAA CAAACAATGA AGAGAATTTA CGGAGTACTT GAGAAACAAT TTAGAATATA CTACGAAAGA GCTGTCAAAC AATCTGGCGA TACCCGTGAA AACCTGGTAG CACAAGTTGA GAGAAGACTT GATAATGTTG TTTACAGACT TGGATTCGCA ATTAACAGAA GAGCAGCAAG ACAACTTGTC TCTCACGGAC ATGTACTTGT AAACGGGAAG AAAGTTGACA TCCCATCATA CCAAGTCAGA CCAGGTGATG TTATTTCTAT AAAAGAAGGA AGCAGAACAA TAGAACCAAT CAAACAAGCA ATAGAGCTAA ATAAAGGTAG AGCAATTTCA AATTGGCTTG AAGTTGATTA CGATCAATTT AAAGGAGTAT ACGTAAGAAA TCCAAAATTA GAAGAAATTA TTGATCTCCC AGTTAACGTA CAGGCTATTG TCGAATTCTA CTCGAGGTGA
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Protein sequence | MARNTGPLCK LCRREGMKLY LKGERCFSEK CPFDKRPFAP GQHGREKKKL TQYALQLRAK QTMKRIYGVL EKQFRIYYER AVKQSGDTRE NLVAQVERRL DNVVYRLGFA INRRAARQLV SHGHVLVNGK KVDIPSYQVR PGDVISIKEG SRTIEPIKQA IELNKGRAIS NWLEVDYDQF KGVYVRNPKL EEIIDLPVNV QAIVEFYSR
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