| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1077 |
|---|
| Symbol | |
|---|
| ID | 5453280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 1176912 |
|---|
| End bp | 1177922 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640874845 |
|---|
| Product | cellulase |
|---|
| Protein accession | YP_001410582 |
|---|
| Protein GI | 154249757 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1363] Cellulase M and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0394198 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAGT ATTTAAAAGA ACTCACAGAA TTAAAGGGAG TTTCTGGATT TGAAGATGAT
GTAAGGGAAT ATATAAAAGA GAAAATAAAA GATAAAGTGG ATGAATTGTT TGTAGATAGA
ATGGGAAATC TAATAGCGCT AAAGAAAGGC AATGGGAAAG GTAAGAAAAT ATTGCTTGAT
GCACATATGG ACGAGGTTGG ATTTATGGTA ACTAACATCA ACGAAGATGG TACATTATCA
TTCGCGCCAG TTGGTGGCGT TGACCCAAGG GTTATAATTG GTAAAAAAGT TCAAGTTGGT
AAAGAATCAA TAGGCGTGAT AGGTTACAAA GCCGTCCACA TTCAAAGAGA AGGAATGATG
AACACACCCA AATACTCAGA ACTTAAAATA GACATAGGAG CGAAATCAAA ACAAGAAGCG
GAAAAACAAG TCAAAATAGG TGATATGGTG GCGTTTACAA CAAATTACGA AGAATCTGGA
GACTTCGTAA TTGCGAAAGC TCTTGATGAC AGATGTGGTT GTAGTGTGCT TATGGATTTA
ATAGATGAAT TATCAAATAA AAATTCGTTG CCAAACGACG TTTACTTTGC TTTCACTGTC
CAGGAAGAGA CAGGCTTAAG AGGCCCTGCA ATAATAGCGG AACAATTAAA AGTTGACATG
GCGATAGCCG TCGAAACAAC AACAAGTGGT GACGACCCAG AACTTGAAAA GCAACTTTGG
TCCACTCACC TTGGTAACGG TCCTGCGATA ACATTTATGC ACAGTGGATA CGTTGTTCAT
CAAGAAATAT TTGAAAAACT CGTCCAGATA GCCAAGGAAA ACAATATACC ATTCCAATAC
AAAATGCGCA CAGTTGGAGG CACAAACGCA AGAAGATACG CTATAACTGG AATACCTGCG
GGAGTTGTAT CAGTTCCTGC AAGATACATT CACAGTCCAG TCTCGTCGAT AAATAAAAAC
GATTACAAGC ATACGTTAAA TTTGTTAGAA ATGTTTCTTG AAAAAGAATA A
|
|---|
| Protein sequence | MMKYLKELTE LKGVSGFEDD VREYIKEKIK DKVDELFVDR MGNLIALKKG NGKGKKILLD
AHMDEVGFMV TNINEDGTLS FAPVGGVDPR VIIGKKVQVG KESIGVIGYK AVHIQREGMM
NTPKYSELKI DIGAKSKQEA EKQVKIGDMV AFTTNYEESG DFVIAKALDD RCGCSVLMDL
IDELSNKNSL PNDVYFAFTV QEETGLRGPA IIAEQLKVDM AIAVETTTSG DDPELEKQLW
STHLGNGPAI TFMHSGYVVH QEIFEKLVQI AKENNIPFQY KMRTVGGTNA RRYAITGIPA
GVVSVPARYI HSPVSSINKN DYKHTLNLLE MFLEKE
|
|---|
| |