Gene Fnod_0519 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_0519 
Symbol 
ID5451613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand
Start bp572175 
End bp575567 
Gene Length3393 bp 
Protein Length1130 aa 
Translation table11 
GC content35% 
IMG OID640874268 
ProductUvrD/REP helicase 
Protein accessionYP_001410039 
Protein GI154249214 
COG category[L] Replication, recombination and repair 
COG ID[COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAATC TTGGAAAGTC CGTTGCAGAT ATAGTTAGAG AAAATCCAAA TTGCAATTAT 
TTCATCTCAG CATCTGCTGG GACAGGTAAA ACTTACACTT TGACGAACTA TTACATGGGG
ATTTTGGAAT ACTACGAAAA GGAGAATAAT CCAGATATAG TCGATGGTAT TTTGGCAGTG
ACGTTTACTA ACAAAGCCGC AAACGAAATG AAAGAAAGGA TAATGAATAA AGTCAGAGAA
AAGATTACAT CTTCATCAGT CAGTAACTTG GCTTATTGGA AACGTGTTTA TTCCAATATG
TCCAGAGCGG TTATCTCAAC AATCGACAGT TTTTGCAGAA GAGTGTTGAT TGAGCAAAAT
ATCTACGCTG GTGTCGACCC GAATTTTACA ATTATCAACG ATTTAAAACA ATTGAAAATC
ATCGATAGCG CCTCACGGCA GGCTATGGAA ATCGCTTTTA AGGTGTACGA AGATTTGGAA
ATTCCGCTCT CCCCAATGCT TTCAAGCGAA AGAAGGAAAA GAATAGAAGG ATATATAAAA
GAATTGAAAG AAATAAAGGA TTCCATTATC GACCTTTTTG AATTAGTTGG AGATGTTTGG
AGAGTGAAAG GTTTTGTTGA GGATATAGTT ACAAACTGGA GGCTTGAGCT TAGACAGTCC
AACGTTAGTA AATTACTACT GGATGTGATG AAAAAAGCAG GTAATTCTTT TAGAGTTTTG
AGGCTCATTA GTTTAATTGC CTCAGAGCTT TACGAAGCAG AGACAATTGA TAACTTTGAA
TACGATTTCA AAGGCGTACT GGAAAAGACT ATCGAAGTTT TGAATAATAA TGAAGAAGTT
AGAAAATATT ATCAAGAGAG GTTCAAATAT ATCATAGTTG ATGAGTTCCA AGACACAAAT
GAACTCCAGC GCATGATATT TGATTTTATC CACACGGACA AAAATTACAT ATTCTATGTC
GGAGATAGGA AACAGTCGAT ATACAGATTC AGGGGCGCTG ATGTTTCTGT TTTTGTAAAG
ACGATGGATG AATTTGAGAA AAGGGCAAAG ATTTCACCTG ATAAATACAG GATACTTTCG
CTCCAAACTA ATTACAGATC GCATGAATTT CTCGTTGATT ATTTTAACAA AGTTTCGAGG
GATTCTATAT TTAGAAATGA AATCTACGAT ATGCTTTCTA ATTTAAATGG TTTTAATTCT
AATAAGCCGA TATCTGAAAT ATCCGATGAT GAAGCAAAAC TTTATCTGCA CGAAGCTTTT
AGGTTGCGCT ATCGGGACTT GTACGATAAA CTTTGGTTCT TAGATGAAGA CATTTCAAAT
GCACATATTA AAAAGTTAGA AAGTGAAGTT ATTCCACAGA TTGATTTTCT CAACGAGAGC
ATAAGTAGGG TTTCCTACTT AAGTATAGTA TCACTCGATG AAAAAGTTTC TCCCGAAGAC
GAGGCAAATT TGGTTGCAAT GGCTATTAAA AATTTAGTTG GCAAGGAGAT TACTATTTTC
GATAAAGAGA AGAATGATTA CGTAACAAGA AAAGTGGAGT ACAAAGACAT AGCTATCTTA
AGTTACAAAT TAGCGGGTAT TGAATCGATA TACAGAGAAA CTTTTGGTAA ATTCAATATC
CCACTTTATG TTGTAAAAGG GCGAGGATTT TACAAACGCC CTGAAATAAG AGCAGTTATT
TCCGCGCTTT CCGTGATTCA AAATCCTAAC AATGACTATA ACTTCGTTGA ATTTTTCCTT
ACGCCTTTTG TCGAATCAAC AGATTTCTCA CCATCTTTCG ACAAATTCAA AATATTGCAC
AAAATAGTTT TAAACGCAAG AAAATTAAGG GAAAACGGTG AGAGAATATC ATTCTTCCAA
TCAGCTAAAA AACTTGGCAA AGAAGATTTG CCAGACTACG TTTCCGAAAT GATCGAACTT
GTGCAAAAGT ACGATGAATT GAAATACTTT TTAAGACCAG CCGAGGTTTT GAAAGGATTC
ATCAACGAGA GTTATTACTT AGCTAAACTT TCGAAATTTC CAAACAGTGT CCAAAGATTG
AAAAACGTTA AGAAATTGCT TGACCAAGCT ACGGAATTTA ACCAACAGGC GTCGACATTC
TCCGAGCTAA TAAGATTGCT TTCAAAAGTG GAGGAATTAC AAGAGACCGA GGCTTCCGAA
GTTTCCGAAG AAGACAACGT CGTTAAGATG ATGACAGTGC ATGCTTCAAA AGGACTTGAG
TACAACATAG TTTTCCTTGT TAACAATAAT TTTAATGAGA TGGAATCTGA TGAGGTATTC
TTCCCATCGG ATGACAATGG AGGAAGGTAT ATTCATATCA AAAGGTTCAT AGAGAATTAT
AAGGATAAGT TTAATATAAA CAAGGATGAG TATAAGAAAT TAAAGGGAGA ATTGGAAGCA
GAGTTAATAT ACGATGAGAC TGAGATACTG CGAAAGATAT ACGTGGCTAT AACCAGGGCA
AAAGAGATGT TATTTGTGGT AACGTACAAT ACTAATAGCT CTAGGGGGAA AAGAGGAAAA
ACTGCTGGAC AATACCTTGC ACATAATGAG TTTAAAACTA TTACAATAGA CAAAAAGCAA
ATCGATGAAA TGGTAAAATC GCTGAGTATT TCTGAATTTT CAGGGGAAGA GAATAAAAAA
TTGCTAGACG AGGAAAAGAT AAGAAAACAG ATAGAAGATT TTTCGAATAT TGGGTACAAA
AGGTACATAT CACCAACTCT TTTGTACAAC ATTACAGATG AGAAGAGTGA TAAAGAGTTG
GTTAACGAAC TAGAGGTCGA TTTTGAAGAA AATATGCCTC TTTTCGAAGG TCAAGAAAAA
CAAGATATAT TAAAAATTTT CGAAAAAAAT CAAGAAAAAC AAAAGAGAAG TAAAAGTGAG
GTAAGTCTAC TTCTATCTTC GTTACTTGAA ACCTCGAGGG AAGTTATCGA AGGGAAGAAT
ATACATAGAA GGTTGATGAG TGTTCAAAGA TATCCAGATT TGTTGAATCT TGTCGAAAGA
GGAGAGTTGC CCGAGAAGAT ATTGAAAGCG GATGTAATCA AATATCTATT TGAAAACAGT
GATAAGGTTA TTTCCGAATG GAGAATCGCA AAATCGGTGG TTATAGATGG TAAGAAATAT
ACACTCTTTG GTGTGCCAGA TAGGGTGTTT TTCAAAGATG GAAAGATATA CGTTGTTGAT
TTTAAATCAT CGTATCTAAA GGATGGTTCT GAAGAAGTTG AGAAGTACAA ATTCCAGCTC
CAATTTTATA TGTACATGCT TAAAGATTTC GGAGAAATTG CTGGAGGGTA TTTAGTCGGC
GCAAGAAGTG GGTTCGTTAT TAGAGTTGAA AGACCTGGCG ATGATTTCAT TGAATTACTG
GCAAAGCTGA TAAGAAATTT AGAGGTGATA TAG
 
Protein sequence
MQNLGKSVAD IVRENPNCNY FISASAGTGK TYTLTNYYMG ILEYYEKENN PDIVDGILAV 
TFTNKAANEM KERIMNKVRE KITSSSVSNL AYWKRVYSNM SRAVISTIDS FCRRVLIEQN
IYAGVDPNFT IINDLKQLKI IDSASRQAME IAFKVYEDLE IPLSPMLSSE RRKRIEGYIK
ELKEIKDSII DLFELVGDVW RVKGFVEDIV TNWRLELRQS NVSKLLLDVM KKAGNSFRVL
RLISLIASEL YEAETIDNFE YDFKGVLEKT IEVLNNNEEV RKYYQERFKY IIVDEFQDTN
ELQRMIFDFI HTDKNYIFYV GDRKQSIYRF RGADVSVFVK TMDEFEKRAK ISPDKYRILS
LQTNYRSHEF LVDYFNKVSR DSIFRNEIYD MLSNLNGFNS NKPISEISDD EAKLYLHEAF
RLRYRDLYDK LWFLDEDISN AHIKKLESEV IPQIDFLNES ISRVSYLSIV SLDEKVSPED
EANLVAMAIK NLVGKEITIF DKEKNDYVTR KVEYKDIAIL SYKLAGIESI YRETFGKFNI
PLYVVKGRGF YKRPEIRAVI SALSVIQNPN NDYNFVEFFL TPFVESTDFS PSFDKFKILH
KIVLNARKLR ENGERISFFQ SAKKLGKEDL PDYVSEMIEL VQKYDELKYF LRPAEVLKGF
INESYYLAKL SKFPNSVQRL KNVKKLLDQA TEFNQQASTF SELIRLLSKV EELQETEASE
VSEEDNVVKM MTVHASKGLE YNIVFLVNNN FNEMESDEVF FPSDDNGGRY IHIKRFIENY
KDKFNINKDE YKKLKGELEA ELIYDETEIL RKIYVAITRA KEMLFVVTYN TNSSRGKRGK
TAGQYLAHNE FKTITIDKKQ IDEMVKSLSI SEFSGEENKK LLDEEKIRKQ IEDFSNIGYK
RYISPTLLYN ITDEKSDKEL VNELEVDFEE NMPLFEGQEK QDILKIFEKN QEKQKRSKSE
VSLLLSSLLE TSREVIEGKN IHRRLMSVQR YPDLLNLVER GELPEKILKA DVIKYLFENS
DKVISEWRIA KSVVIDGKKY TLFGVPDRVF FKDGKIYVVD FKSSYLKDGS EEVEKYKFQL
QFYMYMLKDF GEIAGGYLVG ARSGFVIRVE RPGDDFIELL AKLIRNLEVI