| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0138 |
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| Symbol | |
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| ID | 5453310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Fervidobacterium nodosum Rt17-B1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009718 |
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| Strand | - |
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| Start bp | 139009 |
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| End bp | 140718 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640873885 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001409662 |
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| Protein GI | 154248837 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTAACAT TGGAAAAGGA AGTTAAGCCA AAAAAACTTG GTGATGTTTT AATAGAAAAA
GGTATTATAA CCCCTTTTGA ACTTGAAAAA GCCTTAGAAA CACAAAGTCA ACTAAAAAAA
CCACTTGGTG AAGTACTTGT ACAGATGGGT TACTGTACAT GGGATGATAT AGTTAGAGCT
TTAGCTGAAC AATACGGAAT AGAAGCTTGC ATTGGTGAAG TCAAAATCGA CAATGAATTT
GTTAAAAAAT TCCCGAAAGA ATTGATTCAA GAATTAAAAA TAGTTCCTAT ATCGGAAAGA
GATGGCAAAT TATTTGTTGG CATATCAAAT GTTTATGACA TACCAAATGT AAAACGAAGA
CTCAAATTTA GAATGAATAA AGACGTAGAT TTTTGTTTAT TTTCACCAAG TGTTTTCGAG
TCCATGTACA ACACAGTTAT TCATGGTATG AGTTCAAGTG TTTTTGCTGA ACAAATAGGC
GATGCAATCG TTCAACAGCA GGAAGAAGAA AAAACCGAAG AAACCGAGAA AATTTCAGAA
GAGGACACAC CAGTTGTTAA ACTTGTTTCA AATATTGTAA GTCATGCTAT AGAACTTGAT
GCGAGTGATA TACATATTGA GCCGCAAAGA AAAAACGTAG TAGTAAGGTA CAGAGTTGAT
GGAGTTCTAA GAAGAATCAC GGAATACCCA AGAAACATGC ATTCCGCAGT TGTTTCAAGA
ATTAAAATAC TTTCCGGATT GGATATTGTT GAACGAAGAT TGCCACAAGA CGGTAAGTTT
TTTATAAAAA AAGACGAAGA ACAATTTGAC CTTCGTGTTT CTACAATGCC CTCAGTCCAC
GGGGAAAAAG TTGTTATGAG AATATTGAAA GTTTCATCAT CCAAGAAAAA ATTAGAGGAT
TTGGGTTATT CACCATATAA CTATGAGAGA ATTAAAAAAC TCATTGAACA TCCTTACGGA
ATAATATTAG TAACAGGTCC AACAGGTAGT GGTAAATCTA CAACATTAGT CGCTGTTATA
AACTCTCTTA ATTCCGAAGA TGTTAATATC GTAACTGCTG AAGATCCTGT TGAATATACA
GTTGATGGTA TCACACAATG TCAGGTAAAT GCAGAAATAG GATTAACATT CGCGAAGTAT
CTTAGAGCTT TCCTAAGGCA AGACCCAGAT ATAATCATGG TAGGAGAAAT AAGAGATAAG
GAAACAGCCC AATTAGCGGT TGAAGCATCG TTGACAGGTC ACCTTGTGCT TTCAACGCTG
CACACAAACA CTGCCGCAGG CGCAATTGAT AGACTTGTAA ATATGGGAAT AGAACCTTCT
CTTATCTCAG CATCATTGAT AGGCGTCATG GGGCAAAGGC TCGTTAGAAA AGTCTGTCCT
TATTGTAAAG TTGAAACTGA ATTACCACCT GAATACGCTG AAAAAGCAAA AAAGATATTC
CCAGATATGA AGCCAATACA ATATGTAGGT CAAGGTTGTG ATAAATGTAA TAACACAGGC
TATAAAGGTC GTACAGCGGT TGCTGAAGTT CTTATCGTTA ACGATGAAAT AAGAAGGTTA
ATACAAAAAG AAGCTTCAAC ATTTGAGTTG GACAAAGCTG CAAGAAAAAA TGGAATGATT
TCCATGTTCC AAGACGGACT CTACAAAGTA CTTTCTGGTG AAACAACCAT TGCAGAGATT
CTGTCTGTTG TTGGTGAAGA GGAGGAGTGA
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| Protein sequence | MVTLEKEVKP KKLGDVLIEK GIITPFELEK ALETQSQLKK PLGEVLVQMG YCTWDDIVRA
LAEQYGIEAC IGEVKIDNEF VKKFPKELIQ ELKIVPISER DGKLFVGISN VYDIPNVKRR
LKFRMNKDVD FCLFSPSVFE SMYNTVIHGM SSSVFAEQIG DAIVQQQEEE KTEETEKISE
EDTPVVKLVS NIVSHAIELD ASDIHIEPQR KNVVVRYRVD GVLRRITEYP RNMHSAVVSR
IKILSGLDIV ERRLPQDGKF FIKKDEEQFD LRVSTMPSVH GEKVVMRILK VSSSKKKLED
LGYSPYNYER IKKLIEHPYG IILVTGPTGS GKSTTLVAVI NSLNSEDVNI VTAEDPVEYT
VDGITQCQVN AEIGLTFAKY LRAFLRQDPD IIMVGEIRDK ETAQLAVEAS LTGHLVLSTL
HTNTAAGAID RLVNMGIEPS LISASLIGVM GQRLVRKVCP YCKVETELPP EYAEKAKKIF
PDMKPIQYVG QGCDKCNNTG YKGRTAVAEV LIVNDEIRRL IQKEASTFEL DKAARKNGMI
SMFQDGLYKV LSGETTIAEI LSVVGEEEE
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