Gene Fnod_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_0004 
Symbol 
ID5452948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand+ 
Start bp3826 
End bp4926 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content39% 
IMG OID640873754 
Productbasic membrane lipoprotein 
Protein accessionYP_001409534 
Protein GI154248709 
COG category[R] General function prediction only 
COG ID[COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0274031 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGGT TTTTAGCAGT TGCGTTGTTA GCACTCTTGT TAACATTCGG TTTTTCGTTC 
AAGGCTATTA TGGTTACCGA CACAGGTGGT CTTGGCGATA AGTCATTTAA CGATGGTACA 
TGGGCTGGCG TTCAAAGAGC GGCAAAAGAA CTTGGTGTTG AAGCAAAAGT TATCATGTCG 
CAAGAACAGT CAGACTACAT ACCAAACCTT ACTAAAGCAG CAGAAGAAGT TTCAAAGGAA 
AAAGACGGCG GTATCGTTTT TGCAGTCGGC TTCATGATGC AAGATGCTCT TGAAAAAGTA 
GCGAAGCAAT ATCCTTCTGT CTATTTCGCA GGTATTGATA TTGAATTTGG TAAGGAACTT 
CCAAACGTTA TTAATTTCCT CTTTAAAGAA CAAGAATCAG CATTCCTTGT TGGTTACGTT 
GCTGCAGCAA TGACAAGGAC AGGAAAAGTT GGATTTATAG GCGGTATTCC AATTCCACCA 
GTTGAAAGAT TCAGATACGG TTATGAAGCA GGTATAAAGG CATATCAAGA CCTCCATGGT 
AAAAAAATTA CGGTTATTAA AGGCTACACA AACGAGTTTA GTGATCCAAA GAAAGGTAAA 
GACCTTGCTA ATTCTCAATT TTCACAAGGT GCAGATATTA TATTTGCTGC AGCTGGTGCT 
TGTGGTAACG GCGTTATAGA AGCAGCAAAG GAAAGAAGCG AAAAACTTGC CGGTAAAGGT 
TTAGATAATA TTAAGAAATA TGCCCTTTCT GGTAAGGCAC TTTACTATGC GATAGGTGTC 
GATGTTGATC AAGATTACAT GGCCCCCGGT GTAGTTCTCA CAAGCGCTAT GAAAGGTGTT 
GATACAGCGG GTTATTATGG AGTAACTTGG GCATTCAAAG GACAATTCAA AGGTGGATTG 
AAGACTCTTG GACTCAAAGA AAATGGTGTT AGAATGTCTG AAATGAAATA CACAAAAGAC 
ATTATAGATA AACTTGCTCC AAATGTACTT AAAGAGCTTG AGTACCTTAA AGGTCTTATA 
ATCGAAGGTA AGATTACAGT TCCAGACTCA GAAGACGCAC TTAAGGCGTT TACAGTAAAA 
GGAGTAAAAC TTCCAAAATA A
 
Protein sequence
MKRFLAVALL ALLLTFGFSF KAIMVTDTGG LGDKSFNDGT WAGVQRAAKE LGVEAKVIMS 
QEQSDYIPNL TKAAEEVSKE KDGGIVFAVG FMMQDALEKV AKQYPSVYFA GIDIEFGKEL 
PNVINFLFKE QESAFLVGYV AAAMTRTGKV GFIGGIPIPP VERFRYGYEA GIKAYQDLHG 
KKITVIKGYT NEFSDPKKGK DLANSQFSQG ADIIFAAAGA CGNGVIEAAK ERSEKLAGKG 
LDNIKKYALS GKALYYAIGV DVDQDYMAPG VVLTSAMKGV DTAGYYGVTW AFKGQFKGGL 
KTLGLKENGV RMSEMKYTKD IIDKLAPNVL KELEYLKGLI IEGKITVPDS EDALKAFTVK 
GVKLPK