Gene Fjoh_5033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFjoh_5033 
Symbol 
ID5092177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFlavobacterium johnsoniae UW101 
KingdomBacteria 
Replicon accessionNC_009441 
Strand
Start bp6073284 
End bp6073784 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content35% 
IMG OID644744458 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001197351 
Protein GI146302760 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCGTG ATGCCCAGCG TCAGGTTTAT GAGCACATGG CTCCAAAATT GTATCGCGTC 
TGCAAACGAT ACCTAAAGAA AGAAGAAGAA ATCGAAGAGG CGCTTGCCGA TGCTTTCTAT
ACCATATTTA CAAAATTAGA TCAGCTTAAG GAAGAAAAAG CCTTTGAAGC TTGGGCCAGA
AAAATTGCCG TTAATTATTG TTTGGCATCA ATCAAGAAAA ACACAAACTT CAATATGTAT
CTTGATGATG TTAAGGTTCT TTCGCAGCCT TTTACAGAAG AAATGAACGC ATTAGAAGAA
GAAGATTTAC TCAATTTATT AAACCATATT CCAGACGGCT GTAAAACTGT TTTTAACCTT
TTTGTTATTG AAGGTTACGG ACATAAAGAA ATTGCAGCTA TGCTTAACAT TTCTGAAGGC
ACTTCAAAAT CACAATTGAA TGCCTCAAAA ACCAAGCTGA AGGAATTAGT AAATAAATTG
TATTATCAAA AAGCAAAATA G
 
Protein sequence
MNRDAQRQVY EHMAPKLYRV CKRYLKKEEE IEEALADAFY TIFTKLDQLK EEKAFEAWAR 
KIAVNYCLAS IKKNTNFNMY LDDVKVLSQP FTEEMNALEE EDLLNLLNHI PDGCKTVFNL
FVIEGYGHKE IAAMLNISEG TSKSQLNASK TKLKELVNKL YYQKAK