| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4842 |
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| Symbol | |
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| ID | 5089470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Flavobacterium johnsoniae UW101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009441 |
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| Strand | + |
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| Start bp | 5858845 |
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| End bp | 5862864 |
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| Gene Length | 4020 bp |
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| Protein Length | 1339 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 644744265 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001197160 |
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| Protein GI | 146302569 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCACG CCAATAAGGA ACATTATTTT TTAGCCGATG GCGGAGAAAT GGGCGAATTA
ATACGCTCCA AAGACTGGAG CAAAACTCCC ATAGGTGATC CTGAAAACTG GCCTCAAAGT
CTGCGTACCA TAACTTCGGT AATGCTCAAT AACCCGTTTG GAATGTATAT AGCGTGGGGA
AATGAATTTA CGCAGTTATA CAATGATGCT TTTCGTAAAA TTATTGGTTC AGATAAACAT
CCTGATGCTT TAGGAAATTC TCCAGAAAAA ACATTTTCTG AAATCTGGCA TATTACAAAT
CCCATGTTTG AGGAAGTAAT GAACGGAAAA TCAATCAGTT TTCCAGATTT TGTTGTTCCG
CTAAACAGAA ATGGCGTTGT TGAAACCTGT TATTTCGATT TTTCTTATTC ACCAATACGA
ATAGAAAATG GCAAAGTAGG CGGTATTTTA GTAACCGTAA TTGAAACTAC TGCAAAGAAA
AAAGCTGCTG ATCTTTTAAA AGAAAAAAAT GAGCGTTTTA AAAACAACAT CATGCAGGCG
CCATTGGCAA TGTGTATTTT TAGAGGAAAA GATCATATTG TAGAAATTGC CAACGAAAAA
ATGATACAGC TCTGGGGAAC CACTTCAGAA AAAGTACTCA ACAAATCTAT TTTTGAAGTT
CTGCCCGAAA TTAAAGATCA GGGATTAGAA GAGCTTATTC AAAACGTTTA CACAACCGGA
AAAAAGTTTA TTGCCAATGA ACGTTTGGTT GAGCTTTCTC GAGATGGAAA AACAGAACAT
ACTTATGTCA ATTTTATTTA TGAAGCCTTA ACCGAATGTA CCGGAAGTAT TTCGGGCGTT
GTCGCTATTG CAATAGAAGT TACAGATCAG GTTGAAGCCC GATCAAAATT ACAGCAAAGT
GAACAAAAAA TCAGACAGCT TGTAGAAAAT GCTCCTTTTC CTATTGGAGT TTATGTTGGC
AGAGAAATGC GTATCGAACT TGCCAACGAT TCTATCATAA AAGTATGGGG AAAAGGTCCG
GATGTTATTG GAAAATCATA CAGAGAAATT CTGCCAGAAC TTAATAATCA ATCGGTTTTT
GAACAGGTTG AAAGTGTTTT AAATACCGGA AAATCTTTTC ACAACAAAAA TGCCCGGATT
GATATAATGA TTAACAATAA ACTAGAAACT TTTTATTTCA ATTACAGTTT TACGCCTTTG
TTTGACACAA ACGAAAAAGT ATATGCTGTA ATGAACACTG CAGCCGATGT TACTGATTTG
CATCTGGCAT CTAAAAAAAT TGAAATTGCC GATAAACGTT TCCGTGATAC CGTAAAACAA
GCGCCTCTTG GAATTACAAT TCTCCGCGGA CCAGAATATA TTGTAGAATC AGCAAACGAA
GCGTATCTAA AATTAGTTGA CAAAGAAGAA AATAGTTTTG TTGGAAAACC TTTGTTTGAT
TCTCTTCCAG AAGTAAGAGA AACGGTAGAT TCTTTATTAA AAAATGTTTT AACAACGGGT
ATTCCCTATC ATGGAAATGA AGTTCCTGTT CCTTTAAATC GATATGGAAA ACAAGGAATC
TGGTATTTTG ATTTTCTGTA TTATCCGCTT AGAGAAGAAG ACGGCGAAAT AACCGGAATT
ATTGTAACGG TAACAGAAGT AAGCGAAAAA GTCGATGCCC GAAAAAAAAT CGAGCAAAAC
GAAGACCGCT TAAATATTAT AGTTGAAGCC AGCGAATTAG GAACCTGGGA TTTAAACGTA
AAAACCGGCG AACTTCATTA TTCTCAAAGA TATCTGGAAA TTCTGGGCAA TTACAAGGAT
CCTATTATAT TATCTCACGA AGAAATATTA AAACACCTGC ATCCGGATGA TATGCAAATT
CGAAATGCAG CTTTTAAAGA AGCTATTTTA TCCGGAAATC TTCATTATGA AGCTCGAATT
ATCTGGCCGG ACAATTCTAT TCACTGGGTA GAAGGAAAAG GAAAAGTTTT TTATGATAAA
AATGATAATC CCGACAAGTT AATTGGAACG GTACGCGATA TTACAAGCGA AAAAAATCAT
CAGCAGGAAT TAGAACAAAG CGAAAAAAGA TTTAGAAATC TGGTAATGCA GTCCCCTATC
CCAAAAGCCA TTTTAAAAGG GAGCGATATG GTTATTGAAA TAGCCAATTT AGCTTTGCTT
AAAAACATTT GGAAGAAAAA AGAAAGCGAC GTTCAGGGTA AAAAACTCTT AGAAATTTTT
CCGGAACTCT CTTCTCAAAA ATATGGCAGA ATATTAAATG AAGTATATCT TTCCGGAGAA
GTACATTCTG AAATAGAATC TCCTATTCTT ATCAATGGCG ACGATGGTGA GCATTTGTTT
TATATTGATT TTGAATATGC TCCAATGTAC GATACCGATA ATAGTATATC CGGAATTAGA
GCCACAATTG TTGATGTAAC AGAAAAAGTC CAGGCACGAA ACAAAATCGC CGAAAGCGAA
AAGCGTTTCC GTTCTTTAAC CGAAAGTATT CCACAGTTAA TTTGGGAAAC CGATGAAAAA
GGAAATGGTT TATTTGCCTC TGGAAAATGG GCTGAATATA CCGGAATAAA ACCAACTGGC
GATGCTGAAT GGAAATCTAT GATTCATCCC GAAGATTTTA AAGAAAATAT AAAAATCTGG
AATCATAGTT TGCATACAGG ACAAGTTTTT AGATCTGATG TCAGAGTACT TAGAAAAGAC
GGCAGTTACA GATGGCATAC CGTATTGGGT GAACCAGTTT TAGATGCCGA TAATAAAATT
GTAAAATGGG TTGGCGCCTT TACTGATATT CATACCGAAA AAGCTTTTAC AAACGAGCTG
GAACAACAAG TTACAGCAAG AACGCGGGAA TTAAGCCAAA TGTACGAATC GCTTAAAAAA
AGCGAAGAAC GTTACCATTT AATGGTCGAA GAAGTACAAG ATTACGCCAT TTTATATTTA
AGCCGCGACG GAATAGTAGA AAACTGGAAT ATTGGTGCTG AAAAAATTAA AGGTTATAAA
GCACAGGAAA TTACCGGAAA ATATTTTGGC ATATTTTACA CTCCCGAAGA TCAAAAAAAC
AATATTCCAA GTACTTTACT AGAACTCGCC AGAGAAAAAG GAAGAGCAGT TCAGCAAGGC
TGGCGCGTGC GCAAAAATGG TACTTTATTT TGGGCCAGTG TAGTAATTAC AGCCATTCAT
AATAAAGATA ATGAGGTTAT TGGATTCTCA AAAGTAACGC ATGACTTAAC CGAGAAAAAA
AGAGCCGATG ATAAAATAAA ACTGAATGCT CTCGAACTGG AACAAAAAAA TGCAGAACTG
GAACACATGA ACAAAGAACT TCAGTCCTTT GCTTATATTT CCAGCCATGA TTTACAGGAA
CCGCTTCGAA AAATTCAGAC TTTTGCTTCG CAGATTATTG AAAAAGAATT TGAAAATTTA
TCTGATTCTG GAAAAGATAA ATTTCAAAGA ATGCAAAATG CGGCTAAACG CATGCAGACT
TTAATTCATG ATTTGTTATC GTATTCAAGA ACAAACATTC AGGATAGAAC TTTTGAGCAA
ACCAGTCTTT CTAAAATTAT TGAAGAAGTA AAGGAAGATC TCCGTGAAGA ACTCGAACAA
AAAAATGCCG TAATTGAAAG TAACGAAATT GCAGATGTAA GTATTATACC ATTTCAGTTT
AGACAGCTGC TTTATAATCT GGTCAGCAAT TCGCTTAAGT TTTCAAAACC AGATGTACCT
GCTTTAATAA AAATTGAAAG CAAAATCGCA AAAGGTTCTG AGTTTGAAGA AAAGTCATTA
GAAAGTGAAA CTCAATATTG CCATATTAAA GTTTCTGACA ACGGAATTGG TTTTGAACCG
CAGTACAGTA AAAAAATATT TGATGTTTTT CAGCGTTTAC ATGGACGAGA CCAATATAAC
GGAACCGGAA TAGGTCTAGC AATCGTAAAA AAAATTGTTG AAAACCACAA CGGAATTATA
ACTGCCAAAG GCGAACAAAA CCAAGGAGCA TCTTTTGATA TTTATATTCC GGTATCATAA
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| Protein sequence | MSHANKEHYF LADGGEMGEL IRSKDWSKTP IGDPENWPQS LRTITSVMLN NPFGMYIAWG
NEFTQLYNDA FRKIIGSDKH PDALGNSPEK TFSEIWHITN PMFEEVMNGK SISFPDFVVP
LNRNGVVETC YFDFSYSPIR IENGKVGGIL VTVIETTAKK KAADLLKEKN ERFKNNIMQA
PLAMCIFRGK DHIVEIANEK MIQLWGTTSE KVLNKSIFEV LPEIKDQGLE ELIQNVYTTG
KKFIANERLV ELSRDGKTEH TYVNFIYEAL TECTGSISGV VAIAIEVTDQ VEARSKLQQS
EQKIRQLVEN APFPIGVYVG REMRIELAND SIIKVWGKGP DVIGKSYREI LPELNNQSVF
EQVESVLNTG KSFHNKNARI DIMINNKLET FYFNYSFTPL FDTNEKVYAV MNTAADVTDL
HLASKKIEIA DKRFRDTVKQ APLGITILRG PEYIVESANE AYLKLVDKEE NSFVGKPLFD
SLPEVRETVD SLLKNVLTTG IPYHGNEVPV PLNRYGKQGI WYFDFLYYPL REEDGEITGI
IVTVTEVSEK VDARKKIEQN EDRLNIIVEA SELGTWDLNV KTGELHYSQR YLEILGNYKD
PIILSHEEIL KHLHPDDMQI RNAAFKEAIL SGNLHYEARI IWPDNSIHWV EGKGKVFYDK
NDNPDKLIGT VRDITSEKNH QQELEQSEKR FRNLVMQSPI PKAILKGSDM VIEIANLALL
KNIWKKKESD VQGKKLLEIF PELSSQKYGR ILNEVYLSGE VHSEIESPIL INGDDGEHLF
YIDFEYAPMY DTDNSISGIR ATIVDVTEKV QARNKIAESE KRFRSLTESI PQLIWETDEK
GNGLFASGKW AEYTGIKPTG DAEWKSMIHP EDFKENIKIW NHSLHTGQVF RSDVRVLRKD
GSYRWHTVLG EPVLDADNKI VKWVGAFTDI HTEKAFTNEL EQQVTARTRE LSQMYESLKK
SEERYHLMVE EVQDYAILYL SRDGIVENWN IGAEKIKGYK AQEITGKYFG IFYTPEDQKN
NIPSTLLELA REKGRAVQQG WRVRKNGTLF WASVVITAIH NKDNEVIGFS KVTHDLTEKK
RADDKIKLNA LELEQKNAEL EHMNKELQSF AYISSHDLQE PLRKIQTFAS QIIEKEFENL
SDSGKDKFQR MQNAAKRMQT LIHDLLSYSR TNIQDRTFEQ TSLSKIIEEV KEDLREELEQ
KNAVIESNEI ADVSIIPFQF RQLLYNLVSN SLKFSKPDVP ALIKIESKIA KGSEFEEKSL
ESETQYCHIK VSDNGIGFEP QYSKKIFDVF QRLHGRDQYN GTGIGLAIVK KIVENHNGII
TAKGEQNQGA SFDIYIPVS
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