Gene Fjoh_2378 details

Gene Information

• Locus tag: Fjoh_2378
• ID: 5092110
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Flavobacterium johnsoniae UW101
• Kingdom: Bacteria
• Replicon accession: NC_009441
• Strand: +
• Start bp: 2847835
• End bp: 2849739
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 644741806
• Product: peptidoglycan-binding LysM
• Protein accession: YP_001194724
• Protein GI: 146300133
• COG category: [R] General function prediction only
• COG ID: [COG3858] Predicted glycosyl hydrolase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.903959
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGAGAAC TTTTAACGAT TTCTCTTGTG TTTGTTTTGT CTTTTAACAA AATCACTGCA 
CAAGATTCAA TAATTGAGCA CAAAATTCAA AAAGGAGAAA CTGCTTATTT CATTGCCCAA 
AAATACAAGG TTTCTGTAGA GGAGATTTAC AAACTCAACC CCGAATCGCA AAACGGAATC 
AAAGACAGTC AAATTATTAA GATTCCCGTT CATTCTTCAG AAAAAACAAA TTCAGACCAG 
CAGATTACCC ACATAGTTGG AGAAAAAGAA ACGCTGTACG GTTTATCAAA ACAATACCAT 
GTTTCGGTAG AAGCTATTCA AAATGCCAAT CAGGCGATTT TGATAAACGG ACTTCAAGTG 
GGGCAGGAAT TAAATATTCC AAATTCTTCA AATTTATCTA AAACTGAAAC AGCAGGTTCA 
TCAAAAGTGA CACATCAGGT TGTGGCAAAA GAATCTTTGT TTAGTATTGC CAGACAATAC 
AATGTTTCGG TTCAGGATTT AGAAAATCTC AACAAAGATA TTTTGATTAA CGGATTGCAG 
ATTGGGCAGA CAATCGCTAT TCCGAATAAA AGAAAAACCT TAGACGGAAG AGTCCGCGTT 
ATAAATCAGG AAACAGTTTT TCATGTGGTT GAACCAAAAG AAACTAAATT TTCGATTTCT 
AAAAAATACG GTATTTCAAT CGGACAGTTA GAATCTCAAA ATCCGGAAAT TGTAAACGGA 
TTAATTGTTG GAAACAAATT AGCGATCAAT ACAAAAGAAA TAAAGCCAGC AAACGAAAGC 
GAAGAGTTAA TGCTTGCCCT TGCCGAAAAA CAAGTTGTAG TTGAGAAAAC AAAAGCCAAA 
ACGGTTGAAA TAGAAGATTT AAAAGACAGA TTGGTTGTTC AAAAAGAAAT GAATCAGAAG 
ATCATAAAGA TTAATGATTT AAAAGTGAAT CTAAATGATA TGAATGGTTC TAAAGAAAAC 
TCGGTAGAAA AACTGCGTTT GGTTTTAGAA GCCAATAAAA ATGTTCAGGA CGTTTTAATG 
GCTAAATTAG ATTCATTGGT AAATACGATG AATAATGATT TGAAAGAATT AAAACGAATG 
GATATTTTAA ATGTTGATGA ATCGAAACGT TTAGAAAAAC AATCGTATGA AAGCATCGGA 
AAAACCAGTG AATTATCTTC TCAATTGAAA AAAGAACTTG CTGAAAACCG TAAAGCTTAT 
GCAGGATTAA TGAATAAAGT TGAGAAAATT GCTGTAGAAG AAAATCAGGA ATACAAAAAG 
AAAATCCGAG AAAGCGAAAA AAATAATAAT GTTACTTCAA TTCAGCAGAG ACTTTCTTTA 
GAAGAAATTA AACGTTATAA AATCGAGCAG GAACAGGGTG ATGCCAAAAA TCAGCTGCTG 
ATTTCTAAAA TTGATTCGCT GGACACTCAA AAACAAATTG AAGTAAAACG TCATATCAGC 
AAAGCATCTT ATTATAGTAT GGAAGCCCGA AAATTTGATG ATAAACTGGC TTTGGTAAAA 
TTAAAGAAAT ACCAGGATGA AGCTGTTAAA AAATCAAACG GTGCAGAAAC TTCAAAAATA 
GTTTCATTAG AAGAGATGCG TCGGGAGCTG AAAGAGAATC CTTTAAAGAA TGAAAAAAAT 
ATAAAGATCG AAGTTTATGA TAATCTTAAA GAAGTTTCGA ACGGCTATTA CTTAGTTTTA 
GGTATATTTA CAGACGCAGT ACCAAGAGAT AAGTTAATTA TGCAGCTTAT TGATTCAGGT 
AACTTTAACG CTGGTTTTTT CTTTAATATA AACAGCCTTT CTTATTATGT ATATGCTGAT 
AAGTTCCAAA ATATGGACGA AGTTTTATAT CAGTGCAAGA AAAAGGAAGA AGATGAGTTA 
TATAAGAATA TTGTTATTAC GAAGTTAGAA ATTGATCTTC GATAG 

 

Protein sequence

MRELLTISLV FVLSFNKITA QDSIIEHKIQ KGETAYFIAQ KYKVSVEEIY KLNPESQNGI 
KDSQIIKIPV HSSEKTNSDQ QITHIVGEKE TLYGLSKQYH VSVEAIQNAN QAILINGLQV 
GQELNIPNSS NLSKTETAGS SKVTHQVVAK ESLFSIARQY NVSVQDLENL NKDILINGLQ 
IGQTIAIPNK RKTLDGRVRV INQETVFHVV EPKETKFSIS KKYGISIGQL ESQNPEIVNG 
LIVGNKLAIN TKEIKPANES EELMLALAEK QVVVEKTKAK TVEIEDLKDR LVVQKEMNQK 
IIKINDLKVN LNDMNGSKEN SVEKLRLVLE ANKNVQDVLM AKLDSLVNTM NNDLKELKRM 
DILNVDESKR LEKQSYESIG KTSELSSQLK KELAENRKAY AGLMNKVEKI AVEENQEYKK 
KIRESEKNNN VTSIQQRLSL EEIKRYKIEQ EQGDAKNQLL ISKIDSLDTQ KQIEVKRHIS 
KASYYSMEAR KFDDKLALVK LKKYQDEAVK KSNGAETSKI VSLEEMRREL KENPLKNEKN 
IKIEVYDNLK EVSNGYYLVL GIFTDAVPRD KLIMQLIDSG NFNAGFFFNI NSLSYYVYAD 
KFQNMDEVLY QCKKKEEDEL YKNIVITKLE IDLR