Gene Elen_1380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagElen_1380 
Symbol 
ID8415678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEggerthella lenta DSM 2243 
KingdomBacteria 
Replicon accessionNC_013204 
Strand
Start bp1646909 
End bp1647430 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content68% 
IMG OID645024349 
ProductPRC-barrel domain protein 
Protein accessionYP_003181738 
Protein GI257791132 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000425186 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.828358 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTACGT GGGCGAACGT TGCCGAGCTA TCTAAAACGA AGACCTTGAC AGGAGGGCTC 
GTCGCGCGCT GCGCGCCGGG TCTTCCTTTT TTGCTGGAAG AGGGCATGGA GGTGGCCTTC
GTGCCGCCTC GGCACGATGC GCCGCGCCGT GCGCGCGTGC TGTCCGTGCA GGACGCGGGC
AGAGACGCCT TCCTCGTGAC GTTCGAAGGC GTCGACTCCA TCGACATCGC CGAGTTGTTG
GTGGGGTGCA GCTGCCTCGT ACGCCGCGCC GATCTGCCCG AAAGCGCGCT GGCCGCCGAG
GCCGACGGCT TGGAAGGCTT TGAAGTGCAC GACGCGCGCG CGGGCTTCGT GGGCGTCGTG
GAGTCGGTGG TGGAGAATCC CGGGCAGTTC CTGCTGAGCG TCGCGCCCGC CGACGGGGGC
AGGCGCGTGC TCGTGCCGCT TGTGGACGCG CTGGTCGTCG GTTTGGACGA GGACGCGCGC
CGCATCGACG TCGACTTGCC GGACGGCCTG CTGGACCTGT AG
 
Protein sequence
MRTWANVAEL SKTKTLTGGL VARCAPGLPF LLEEGMEVAF VPPRHDAPRR ARVLSVQDAG 
RDAFLVTFEG VDSIDIAELL VGCSCLVRRA DLPESALAAE ADGLEGFEVH DARAGFVGVV
ESVVENPGQF LLSVAPADGG RRVLVPLVDA LVVGLDEDAR RIDVDLPDGL LDL