Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Elen_1292 |
Symbol | |
ID | 8415587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Eggerthella lenta DSM 2243 |
Kingdom | Bacteria |
Replicon accession | NC_013204 |
Strand | + |
Start bp | 1549109 |
End bp | 1552594 |
Gene Length | 3486 bp |
Protein Length | 1161 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 645024258 |
Product | transcription-repair coupling factor |
Protein accession | YP_003181650 |
Protein GI | 257791044 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCATCG ATTCATTGAC GTTCACCCTG GAGAAATCGG GCTGCCTCGA CGCGTTCTGG GGCAAGCTGG ACGCGGGCGA GGACGGCACG CTGGGCGTGG CCTCGTCGGC GCGCCCGTTC CTCGTGGCGG CGCGGTTCGC GCACAGGCCC CAGCCGACGC TCGTCGTGGT GGCGGGCGAG GACGCGGCCG TGGCGTTCTC GCGCAGCCTG GCGGCCTACC TGGGCGACGA GCGCGTCATG CGCTTCCCCG AGCGCAGCGA CTACCCCTTC GTGCCGAAGC CCAGCGACCC TGCGCAGGTG GCACGGCGCA TGGAGGCCGT GCACGCGCTG GCCAGCGGCC GCGAGGTCGT GGTGGTAGCC AGCGCCCGCG CGCTCGTGCG CGCGCTGCCG CCGGCGGGCT CCGACGTGCA CGTGCCGGTG GCGCTTTCGG CGGGCCGCGA GCTGGCGGCC ATGCCCGGCG CTCAGGCGGC GAGCGTCACC GAGTTCGAGG ATTTTGCCCA TGCGCTGGAG GAGCGCGGCT ACCGGAACAC CGGCGAGCTG GACGGCCCCG GCACCTTCGC CGTGCGCGGC GGCACGATCG ACGTGTTCCC CGGCAACCTC GTGTACCCGG TGCGGCTGGA CTTCTTCGGC GACGAGCTGG AGGAGATCCG CCGCATCGTG CCCACCACCG GGCAGACCAT CCAGGCGCTG CCGGACGTGA GCATCTACCC CGTGGTGGAG TTCTCGTGCT CCAAGCGGGG GCTCGCCCGC GCGCGCCAGA AGCTGGAGCG GCCGGCCGCG ACGAACCCCG TGCTGCGCGA CGTGCTGGAG AAGCTGGACG GCGGCCTGCG CTTCGACGGT TCCGACATGC TGCTGCCGTA CCTGTACGCG ACCACGTCCA CGTTGGGCGA TTACGTGCGC CCCGGCGCGC TGAGCGTGCT TTTGGAGCCG CGCTCGCTGT TCGACGACAT GAGCCACGCC TACGACGACG CGGCGGGACG CGCGAAGGGA TCGAGCATCC CCGTGGACGG GCTGTACGCC GAGCCCGGGG CCGTGAGCTT CGGCGAGGGG CAGCGCGCAA CCTACGTGTC CATCATGCGC GTGGGCGGGC ACGTGGACGA CGAGCTGCCG GTGAAGCGCG TGGAGGTGGC GGGGCATCCC GACAAGCTGT TCGGTCGGCT GCGCAGCCTC GTGGACACCG ACTACACGGT GGTGTTCAGC GCGTCGAACT TCCGTGCGCG CCAGGACATG AAGCTGGCGT TCGTCGACCA CGGTCTGCCG ATCCAAGAGA CGCTGGACGC GGAAGAGGAC GCCGACGAAC TGGAAGGTAT CGCCAAGCGC CGTCTGCGGC GGGGCGTGGT TAACGTGGTG GACGTGGACG TCCCCCTGGG CATGATCATC CCGAAGGCGA AGCTGGCCAT CGTCAGCCTG TCGGACACGC AGGGGGCGTC CACGTCGCGG CCGTCGCGCC ACGTGGACAT CACCGAGATC ACCTTCCCGT ACCAGCCGGG CGACTACGTG GTGCACGCCG CTCACGGCGT GGCCTACTTC AAGGAGCTGG TCCGCCGCGA CGTGGACGGC ACCGCGCGCG ACTACCTGCT GCTGGAGTAC TCCGAGGGCG ACAAGCTGTA CGTGCCGGTG GAGCAGCTCG ACCGCGTGAC GCGCTACGTG GGGCCGGAGG GCGCGAGCCC GCGCCTTACG CGCCTGAACA CGGCCGATTG GTCGCGAGCG CTGGCCAAGG CGCGCAAGGC CACGAAGAAG CTGGCGTTCG ACCTGGTGGA CGTGTACGCG CGCCGCGCGT CCGTGCAAGG CTACCGCTTC GGGCCCGACA CCGCGGCCCA ACGCGAGATG GAGGAGGCGT TCCCCTACCA GGAGACGCCC GACCAGCTGG CCGCCATCGC GGACGTGAAG GCCGACATGC AGTCGGCGAA GCCCATGGAC CGCCTCGTCT GCGGCGACGT GGGCTTCGGC AAGACCGAGG TGGCCCTGCG CGCCGCGTTC AAGGCGACGC AGGACTCCAA GCAGGTGATG GTGCTGTGCC CCACCACCAT CCTCGCGCAG CAGCACTACA CCAACTTCAA GGAGCGCTGC GAGCCGTTCG GCGTGCGCGT GGAGGTGCTC TCGCGCTTCC GCACGCCCGC GCAGCAGGCC GCCGCCCTCA AGGGCTTCCA GGAAGGTGAC GTGGACGTGC TGGTGGGCAC GCACCGTTTG CTGTCGCGCG ATGTGAACCC GCACGACCTG GGGCTGGTCA TCATCGACGA GGAGCAGCGC TTCGGCGTGG GCCACAAGGA GCAGATGAAG AACCTGCGCG AGTCCATCGA CGTGCTCACG CTGTCGGCCA CGCCCATCCC TCGCACCATG CAGATGTCGC TGTCGGGCGT GCGCGACATG AGCCTCATCC TCACGCCGCC CGACGAGCGC CGTCCCGTGG AAGTGCACGT GGGCGAGTGG GATCCCGACG TGGTGAGCGG CGCTATCAGG CGCGAGCTGG CGCGCGGCGG CCAGGTGTAC TACGTGTCGA ACCGCGTGCG CTCCATGGAG GAGGCGGTGC GGCGCGTCAC CGCGGCCGCG GGCGAGGCGC GCGTGGGCGT GGCGCACGGG CAGATGTCGA AGGAGCAGCT GGAGCGCGTG ATGGAGGACT TCAGCGCCGG CGAGCTGGAC GTGCTGGTGG CCACCACCAT CATCGAGAGC GGCATCGACA ACCCGCACAC GAACACGCTC ATCATCGAGG ACTCGCAGCG CTACGGATTG GCGCAGATGT ACCAGCTGAA GGGCCGCGTG GGCCGTTCGT GCACGCAGGC GTACGCCTAC TTCATGTTCC CCGAGCACAT GGAGCTCACC GAGGAGGCGG CCGCGCGCCT GACCGCGCTG AACGAGCATA CCGATCTCGG CAGCGGCATG CGCATCGCCA TGCGTGACCT GGAGATCCGC GGCGCGGGCA GCCTGCTGGG CGCCGAGCAG TCGGGCAACA TGTCCGCAGT GGGCTTCGAC CTGTTCGCGC AGATGCTGAA CCAGGCCGTG AGCGCCACGC GCGAAGGCGA CCTCAAGGCC ATGGACGCGC TGCCGCCCGC GCTCAGCGAT ATCACGGTGA ACGTGCCGGG GCACACCTAC CTGCCCGAAG AGTACGTGCC GGACGCCGAC GAACGCGTGC TGTGGTATCG CAGGATAGCC TCGGCCGCCA CCGAGCAGGC CGTGGAGGAC GTGCGTGCCG ACTTGGCCGA CAAGCGCCCC GACATGCCGC AGGCGGCGAA GAACCTGTTG GAGAAGGCGC GCATCAAGGC CTACGCCAAC GAGCACCATA TCAAGACCGT GTCGGTGACG GCGGGCAAGC TGGTGGTGGA GCCCATCGAC GTGCCCCGCG ACAAGATGAC GGGTCTGCGC CGTGCTGGCG GCCGCTACCT GGCCGACAAG CGCAAGCTGT CGCTGCCGCT GCGCTACTTC AAGCTGGACG AAGGCGACAA CCTCCTGGCC CCCGTAGCCG AGTTCCTGGA GGAGCTGGCG AAATGA
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Protein sequence | MLIDSLTFTL EKSGCLDAFW GKLDAGEDGT LGVASSARPF LVAARFAHRP QPTLVVVAGE DAAVAFSRSL AAYLGDERVM RFPERSDYPF VPKPSDPAQV ARRMEAVHAL ASGREVVVVA SARALVRALP PAGSDVHVPV ALSAGRELAA MPGAQAASVT EFEDFAHALE ERGYRNTGEL DGPGTFAVRG GTIDVFPGNL VYPVRLDFFG DELEEIRRIV PTTGQTIQAL PDVSIYPVVE FSCSKRGLAR ARQKLERPAA TNPVLRDVLE KLDGGLRFDG SDMLLPYLYA TTSTLGDYVR PGALSVLLEP RSLFDDMSHA YDDAAGRAKG SSIPVDGLYA EPGAVSFGEG QRATYVSIMR VGGHVDDELP VKRVEVAGHP DKLFGRLRSL VDTDYTVVFS ASNFRARQDM KLAFVDHGLP IQETLDAEED ADELEGIAKR RLRRGVVNVV DVDVPLGMII PKAKLAIVSL SDTQGASTSR PSRHVDITEI TFPYQPGDYV VHAAHGVAYF KELVRRDVDG TARDYLLLEY SEGDKLYVPV EQLDRVTRYV GPEGASPRLT RLNTADWSRA LAKARKATKK LAFDLVDVYA RRASVQGYRF GPDTAAQREM EEAFPYQETP DQLAAIADVK ADMQSAKPMD RLVCGDVGFG KTEVALRAAF KATQDSKQVM VLCPTTILAQ QHYTNFKERC EPFGVRVEVL SRFRTPAQQA AALKGFQEGD VDVLVGTHRL LSRDVNPHDL GLVIIDEEQR FGVGHKEQMK NLRESIDVLT LSATPIPRTM QMSLSGVRDM SLILTPPDER RPVEVHVGEW DPDVVSGAIR RELARGGQVY YVSNRVRSME EAVRRVTAAA GEARVGVAHG QMSKEQLERV MEDFSAGELD VLVATTIIES GIDNPHTNTL IIEDSQRYGL AQMYQLKGRV GRSCTQAYAY FMFPEHMELT EEAAARLTAL NEHTDLGSGM RIAMRDLEIR GAGSLLGAEQ SGNMSAVGFD LFAQMLNQAV SATREGDLKA MDALPPALSD ITVNVPGHTY LPEEYVPDAD ERVLWYRRIA SAATEQAVED VRADLADKRP DMPQAAKNLL EKARIKAYAN EHHIKTVSVT AGKLVVEPID VPRDKMTGLR RAGGRYLADK RKLSLPLRYF KLDEGDNLLA PVAEFLEELA K
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