Gene Elen_0013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagElen_0013 
Symbol 
ID8414290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEggerthella lenta DSM 2243 
KingdomBacteria 
Replicon accessionNC_013204 
Strand
Start bp16797 
End bp18608 
Gene Length1812 bp 
Protein Length603 aa 
Translation table11 
GC content64% 
IMG OID645022986 
ProductGTP-binding protein TypA 
Protein accessionYP_003180396 
Protein GI257789790 
COG category[T] Signal transduction mechanisms 
COG ID[COG1217] Predicted membrane GTPase involved in stress response 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.00331586 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGCAAG AGAACATCCG CAACGTCGCC ATTATCGCGC ACGTTGACCA CGGCAAGACC 
ACCATCGTCG ACCGCCTGTT GTACGCCAGC GGCGTGTTCC GCGAGAACCA GCAGGTTGAC
GAGCGCGTGC TGGACAGCAA CGACCAGGAG CGCGAGCGCG GCATCACCAT CCTGTCCAAG
AACATCTCGG TCGTGTACAA CGACGTGAAG ATCAACGTCA TCGACACGCC GGGCCACGCC
GACTTCGGCG GCGAGGTGGA GCGCGTGCTG AACATGGCCG ACGGCGCCCT GCTCATCGTG
GACGCGTTCG AGGGCCCCAT GCCGCAGACC CGTTTCGTGC TGCGCCACGC GCTTGAGCAG
GGCCTGCGCA TCATCCTGGT GGTGAACAAG ATCGACCGTC CGGGCGCGCG CCCCAACGAA
GTGGTGGACG AGGTGTTCGA CCTCATGGTG GAGCTCGAAG CATCCGACGC GCAGCTGGAC
TTCCCCGTCG TCTACGCCAG TGCCATGAAC GGCTACGCCC GTTTCGCGCC CGACGACGAC
AACATGGACA TGATCCCGCT GCTGGAAACC ATCCTCAAGG AGATCCCGGC TCCCGACTGC
GAGCCGAACG GCCCGGTGGC GCTGCAGATC TGCACCGTCG ACCATTCCAG CTTCGTCGGC
CGCATCGGCG TGGGGCGCCT GTTCTCCGGC ACCATCCATA AAGGCGAGCC CTCGCTGGTC
ATCAAGAACG ACGGCACGCG CTACAACACC AACATCAAGC AGGTGTTCAC GTTCGAGGCG
CTGGGCAAGA AGGAGCAGCA GGAGGTGCAC GCCGGCGACA TCGTGGCCGT GGTGGGCGTG
GAAGACGCTG ACATCGGCGA CATGGTGACC AGTCGCGAGA ACCCCGTGCG CTTCGATCCC
ATCCAAGTGG AAGAGCCCAC GATGGCCATC GTGTTCGAGG CATCGTCCAG CCCGCTCGTC
GGCCGCGAGG GCGACATCGT GGGAGCGCGC CAGCTCAAGG AGCGCCTGAT GCGCGAGAAG
GAGAGCAACA TCTCCATGCG CATCGAGGAG CTTGAGGACA AGTCGGGCGT CGAGGTTGCC
GGCCGCGGCC TGCTGCACCT GTCGGTTCTC ATGGAGACGA TGCGCCGCGA AGGATTCGAG
TTCCAGGTAG GTCGCCCGCG CGTGCTCATC AAGAAGGACG AGTCCGGCCG CAAGCTGGAA
CCCATCGAGG AGGCCACGGT GGACGTGCCC AGCGAGTACG CAGGCAAGGC CATCGAGGTG
TTCGGCAGCG CCGGCGGCGA GATGTCCGAC ATGTACCAGC GCGGCGACCA GACGCACCTC
GTGTTCAAGA TTCCGTCGCG CGGCACGATG GGATTGCGCA CCCGTCTGCT GAACGTCACG
CGTGGCGAAG CCACGATGTT CCATCATTTC TCCGAGTACG GCCCGTATCG CGGCGAGATG
AACGGGCGCA AGAACGGCTC GATGATCTCC ATGTCCACCG AGAAGAGCGT CGCGTACGCT
CTGGATGCGC TGCAGGAGCG CGGCCGCCTG TTCGTGGGTC CCGGCCAGGA ATGCTACGAA
GGCATGATCG TGGGCGAGTC GTCGAAGGAA GGCGACATGG TGGTCAACAT CGCCAAGTCG
AAGCAGTTGG GCAACCAGCG TTCGTCGGGC GCCGACAAGG CTATCTCGCT CACGCCGCCC
ATCACGTTCA CGCTGGAAGA GGCGTTGGAG TACATCGAGG ATGACGAGCT GGTGGAAGTC
ACCCCGCAGA ACATCCGCCT ACGCAAGCGG ATGCTGTCGG CCACCGATCG CAAGAAGGCT
GCCAAGAAAT AA
 
Protein sequence
MKQENIRNVA IIAHVDHGKT TIVDRLLYAS GVFRENQQVD ERVLDSNDQE RERGITILSK 
NISVVYNDVK INVIDTPGHA DFGGEVERVL NMADGALLIV DAFEGPMPQT RFVLRHALEQ
GLRIILVVNK IDRPGARPNE VVDEVFDLMV ELEASDAQLD FPVVYASAMN GYARFAPDDD
NMDMIPLLET ILKEIPAPDC EPNGPVALQI CTVDHSSFVG RIGVGRLFSG TIHKGEPSLV
IKNDGTRYNT NIKQVFTFEA LGKKEQQEVH AGDIVAVVGV EDADIGDMVT SRENPVRFDP
IQVEEPTMAI VFEASSSPLV GREGDIVGAR QLKERLMREK ESNISMRIEE LEDKSGVEVA
GRGLLHLSVL METMRREGFE FQVGRPRVLI KKDESGRKLE PIEEATVDVP SEYAGKAIEV
FGSAGGEMSD MYQRGDQTHL VFKIPSRGTM GLRTRLLNVT RGEATMFHHF SEYGPYRGEM
NGRKNGSMIS MSTEKSVAYA LDALQERGRL FVGPGQECYE GMIVGESSKE GDMVVNIAKS
KQLGNQRSSG ADKAISLTPP ITFTLEEALE YIEDDELVEV TPQNIRLRKR MLSATDRKKA
AKK