| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_4112 |
|---|
| Symbol | |
|---|
| ID | 6065922 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 4536728 |
|---|
| End bp | 4537564 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641603534 |
|---|
| Product | transcriptional activator RhaS |
|---|
| Protein accession | YP_001727037 |
|---|
| Protein GI | 170022083 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTAT TACATAGTGT GGATTTTTTT CCGTCTGGTA ACGCGTCCGT GGCGATAGAA
CCCCGGCTCC CGCAGGCGGA TTTTCCTGAA CATCATCATG ATTTTCATGA AATTGTGATT
GTCGAACATG GCACGGGTAT TCATGTGTTT AATGGGCAGC CCTATACCAT CACCGGTGGC
ACGGTCTGTT TCGTACGCGA TCATGATCGG CATCTGTATG AACATACCGA TAATCTGTGT
CTGACCAATG TGCTGTATCG CTCGCCGGAT CGATTTCAGT TTCTCGCCGG GCTGAATCAG
TTGCTGCCAC AAGAGCTGGA TGGGCAGTAT CCGTCTCACT GGCGCGTTAA CCACAGCGTA
TTGCAGCAGG TGCGACAGCT GGTTGCACAG ATGGAACAGC AGGAAGGGGA AAATGATTTA
CCCTCGACCG CCAGTCGCGA GATCTTGTTT ATGCAATTAC TGCTCTTGCT GCGTAAAAGC
AGTTTGCAGG AGAACCTGGA AAACAGCGCA TCACGTCTCA ACTTGCTTCT GGCCTGGCTG
GAGGACCATT TTGCTGATGA GGTGAATTGG GATGCCGTGG CGGATCAATT TTCTCTTTCA
CTGCGTACGC TACATCGGCA GCTTAAGCAG CAAACGGGAC TGACGCCTCA GCGATACCTG
AACCGCCTGC GACTGATGAA AGCCCGACAT CTGCTACGCC ACAGCGAGGC CAGCGTTACT
GACATCGCCT ATCGCTGTGG ATTCAGCGAC AGTAACCACT TTTCGACGCT TTTTCGCCGA
GAGTTTAACT GGTCACCGCG TGATATTCGC CAGGGACGGG ATGGCTTTCT GCAATAA
|
|---|
| Protein sequence | MTVLHSVDFF PSGNASVAIE PRLPQADFPE HHHDFHEIVI VEHGTGIHVF NGQPYTITGG
TVCFVRDHDR HLYEHTDNLC LTNVLYRSPD RFQFLAGLNQ LLPQELDGQY PSHWRVNHSV
LQQVRQLVAQ MEQQEGENDL PSTASREILF MQLLLLLRKS SLQENLENSA SRLNLLLAWL
EDHFADEVNW DAVADQFSLS LRTLHRQLKQ QTGLTPQRYL NRLRLMKARH LLRHSEASVT
DIAYRCGFSD SNHFSTLFRR EFNWSPRDIR QGRDGFLQ
|
|---|
| |