Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_3854 |
Symbol | |
ID | 6064454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | - |
Start bp | 4211735 |
End bp | 4213237 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641603269 |
Product | amino acid permease-associated region |
Protein accession | YP_001726785 |
Protein GI | 170021831 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0531] Amino acid transporters |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00146223 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCCTCACA CGATAAAAAA AATGAGTCTG ATAGGACTCA TATTGATGAT CTTTACTTCC GTATTTGGTT TTGCCAATAG CCCATCGGCT TATTACTTAA TGGGTTATAG TGCGATTCCC TTTTATATAT TTTCTGCATT GTTATTCTTT ATTCCATTCG CCTTAATGAT GGCTGAAATG GGAGCTGCTT ATCGCAAAGA AGAAGGTGGT ATCTATTCCT GGATGAATAA TAGTGTCGGA CCACGTTTTG CCTTCATTGG TACGTTTATG TGGTTTTCCT CTTATATCAT CTGGATGGTG AGTACCTCCG CGAAAGTTTG GGTACCGTTC TCAACATTCC TCTATGGTAG CGACATGACC CAGCACTGGC GTATTGCCGG ACTGGAGCCT ACGCAGGTGG TTGGTCTGCT GGCAGTGGCA TGGATGATTC TGGTCACCGT CGTTGCTTCT AAGGGGATTA ATAAAATTGC CCGCATTACT GCGGTGGGCG GTATTGCAGT AATGTGTCTG AATTTAGTAT TGCTGTTAGT AAGCATTACT ATTTTGTTAT TAAATGGTGG GCATTTCGCG CAGGATATTA ATTTCCTTGC ATCACCGAAC CCGGGTTATC AGTCCGGTCT GGCAATGCTA TCGTTTGTGG TATTTGCCAT TTTTGCCTAT GGCGGAATTG AAGCGGTTGG TGGTCTGGTC GATAAAACGG AAAATCCAGA AAAGAACTTT GCCAAAGGTA TTGTTTTTGC CGCTATTGTT ATTTCAATCG GTTATTCGCT GGCAATATTT TTATGGGGCG TCAGCACAAA CTGGCAGCAG GTATTAAGTA ATGGTTCCGT TAACCTCGGC AATATTACCT ATGTGCTGAT GAAGAGCCTT GGGATGACGC TGGGTAATGC ACTGCATTTG TCACCTGAAG CGTCATTGTC GCTGGGCGTA TGGTTTGCGC GTATTACTGG ACTTTCGATG TTCCTCGCCT ATACCGGTGC GTTCTTTACG CTTTGCTATT CACCGTTGAA AGCCATCATC CAGGGGACGC CGAAAGCATT GTGGCCGGAA CCGATGACGC GCCTGAATGC GATGGGGATG CCGTCTATCG CCATGTGGAT GCAGTGCGGG TTGGTTACTA TCTTCATTCT GCTGGTTTCG TTTGGTGGCG GTACCGCATC GGCGTTCTTT AACAAGCTGA CGCTGATGGC GAACGTGTCT ATGACGCTTC CTTACCTGTT CCTCGCGCTG GCTTTCCCAT TCTTTAAAGC ACGTCAGGAT CTCGACAGAC CATTTGTGAT TTTCAAAACG CGTATGTCGG CAATGATCGC GACGGTGGTT GTCGTACTGG TGGTGACATT TGCGAACGTC TTCACCATCA TTCAACCTGT GGTTGAAGCT GGAGACTGGG ACAGCACATT GTGGATGATT GGCGGCCCTG TCTTCTTCTC GCTGTTAGCG ATGGCGATTT ACCAGAACTA TTGCAGCAGA GTGGCAAAAA ATCCGCAGTG GGCGGTGGAA TAA
|
Protein sequence | MPHTIKKMSL IGLILMIFTS VFGFANSPSA YYLMGYSAIP FYIFSALLFF IPFALMMAEM GAAYRKEEGG IYSWMNNSVG PRFAFIGTFM WFSSYIIWMV STSAKVWVPF STFLYGSDMT QHWRIAGLEP TQVVGLLAVA WMILVTVVAS KGINKIARIT AVGGIAVMCL NLVLLLVSIT ILLLNGGHFA QDINFLASPN PGYQSGLAML SFVVFAIFAY GGIEAVGGLV DKTENPEKNF AKGIVFAAIV ISIGYSLAIF LWGVSTNWQQ VLSNGSVNLG NITYVLMKSL GMTLGNALHL SPEASLSLGV WFARITGLSM FLAYTGAFFT LCYSPLKAII QGTPKALWPE PMTRLNAMGM PSIAMWMQCG LVTIFILLVS FGGGTASAFF NKLTLMANVS MTLPYLFLAL AFPFFKARQD LDRPFVIFKT RMSAMIATVV VVLVVTFANV FTIIQPVVEA GDWDSTLWMI GGPVFFSLLA MAIYQNYCSR VAKNPQWAVE
|
| |