| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_3219 |
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| Symbol | ribD |
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| ID | 6066717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 3525089 |
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| End bp | 3526192 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641602634 |
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| Product | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase |
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| Protein accession | YP_001726168 |
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| Protein GI | 170021214 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000143297 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCAGGACG AGTATTACAT GGCGCGGGCG CTAAAGCTGG CGCAACGAGG ACGTTTTACC
ACGCATCCCA ACCCGAATGT CGGGTGCGTC ATTGTCAAAG ATGGCGAAAT TGTCGGTGAA
GGTTACCACC AACGTGCGGG TGAACCACAT GCCGAAGTAC ACGCGTTGCG TATGGCGGGT
GAAAAAGCCA AAGGTGCGAC CGCCTATGTC ACACTCGAAC CCTGTAGCCA TCATGGTCGT
ACGCCACCGT GCTGTGACGC ACTCATCGCC GCTGGCGTAG CGCGCGTGGT TGCCTCGATG
CAAGATCCTA ACCCGCAGGT CGCTGGGCGT GGACTTTACC GTCTGCAACA GGCTGGCATT
GACGTCAGCC ACGGCCTGAT GATGAGTGAA GCCGAGCAAT TGAATAAAGG CTTTCTCAAG
CGGATGCGCA CCGGCTTTCC TTATATTCAG TTAAAACTTG GCGCATCGCT TGATGGTCGC
ACGGCGATGG CGAGCGGCGA AAGCCAGTGG ATCACTTCGC CCCAGGCGCG GCGTGATGTA
CAACTACTGC GCGCGCAAAG TCATGCCATT TTAACCAGCA GCGCCACGGT GCTGGCGGAT
GATCCTGCCT TAACGGTGCG TTGGTCTGAA CTGGATGAAC AAACTCAGGC GCTCTATCCG
CAACAAAATC TCCGTCAGCC GATACGTATT GTGATTGATA GCCAAAATCG CGTGACGCCG
GTACATCGCA TTGTGCAGCA GCCCGGCGAA ACCTGGTTCG CGCGTACGCA GGAAGATTCT
CGTGAGTGGC CGGAAACGGT GCGTACCTTG CTGATTCCAG CGCATAAAGG TCATCTGGAT
CTGGTTGTAC TGATGATGCA ACTGGGTAAA CAGCAAATTA ACAGCATCTG GGTGGAAGCG
GGGCCAACGC TCGCTGGCGC ATTGCTGCAG GCGGGTTTAG TCGATGAGCT GATTGTCTAT
ATCGCACCTA AACTATTAGG CAGCGACGCC CGTGGATTAT GCTCGCTGCC AGGGCTTGAG
AAATTAGCCG ACGCCCCCCA ATTTAAATTC AAAGAGATAC GTCATGTAGG CCCGGATGTT
TGCCTGCATT TAGTAGGTGC ATGA
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| Protein sequence | MQDEYYMARA LKLAQRGRFT THPNPNVGCV IVKDGEIVGE GYHQRAGEPH AEVHALRMAG
EKAKGATAYV TLEPCSHHGR TPPCCDALIA AGVARVVASM QDPNPQVAGR GLYRLQQAGI
DVSHGLMMSE AEQLNKGFLK RMRTGFPYIQ LKLGASLDGR TAMASGESQW ITSPQARRDV
QLLRAQSHAI LTSSATVLAD DPALTVRWSE LDEQTQALYP QQNLRQPIRI VIDSQNRVTP
VHRIVQQPGE TWFARTQEDS REWPETVRTL LIPAHKGHLD LVVLMMQLGK QQINSIWVEA
GPTLAGALLQ AGLVDELIVY IAPKLLGSDA RGLCSLPGLE KLADAPQFKF KEIRHVGPDV
CLHLVGA
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