| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_2340 |
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| Symbol | |
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| ID | 6064427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | + |
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| Start bp | 2579887 |
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| End bp | 2581872 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641601743 |
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| Product | RNase II stability modulator |
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| Protein accession | YP_001725302 |
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| Protein GI | 170020348 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000293911 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAAACCG TTAGGGAGTC CACAACGTTG TACAACTTTC TCGGATCGCA CAATTCATAC
TGGCGGTTGA CGGAAAGCAG CGATGTTTTG CGCTTTTCTA CCACCGAAAC CACAGAACCT
GAACGTATGT TGCAGTTATC TGCCGAACAG GCTGCTCGAA TCAGGGAAAT GACGGTCATC
ACCTCCAGCC TGATGATGAG TCTGACCGTC GATGAAAGCG ATCTTTCTGT GCATCTGGTA
GGACGAAAAA TCAATAAACG GGAATGGGCT GGCAACGCGT CTGCATGGCA TGACACACCG
GCGGTTGCTC GTGATTTATC ACACGGGCTT TCCTTTGCTG AGCAGGTAGT TTCTGAAGCA
CATTCCGCAA TAGTCATTCT CGACAGCCGG GGGAATATTC AACGCTTCAA TCGCTTATGT
GAAGATTACA CAGGGTTGAA AGAACACGAC GTCATTGGGC AAAGCGTGTT TAAACTGTTT
ATGAGCCGTC GTGAAGCTGC GGCATCCAGG CGCAATAACC GTGTATTTTT TCGAAGCGGC
AATGCATATG AAGTCGAACT GTGGATACCA ACACGTAAAG GCCAGCGGCT GTTTCTGTTT
CGCAATAAAT TTGTCCACAG CGGCAGTGGC AAAAACGAGA TTTTTTTAAT CTGTTCCGGT
ACCGACATTA CCGAAGAGCG CCGCGCTCAG GAGCGACTGC GTATTCTGGC AAATACCGAC
AGTATCACCG GACTGCCGAA TCGTAACGCA ATGCAGGAGT TAATCGATCA CGCTATTAAT
CATGCAGATA ACAATAAAGT TGGGGTTGTG TATCTTGATT TGGATAATTT TAAAAAGGTC
AACGACGCCT ATGGGCATTT GTTTGGTGAC CAGTTATTAC GCGACGTGTC ATTGGCTATT
TTAAGCTGTC TCGAACATGA CCAGGTGTTG GCGCGTCCAG GTGGCGATGA GTTTCTGGTA
CTGGCATCCA ATACCTCACA AAGCGCGCTG GAAGCAATGG CATCACGAAT TTTGACCCGC
TTACGCCTCC CCTTTCGTAT TGGTTTAATT GAAGTTTATA CCAGCTGTTC AGTAGGTATT
GCACTCTCTC CCGAACATGG TTCGGACAGC GCGGCTATTA TTCGTCACGC CGACACAGCA
ATGTACACAG CGAAGGAAGG CGGACGAGGA CAATTTTGCG TTTTTACCCC AGAAATGAAT
CAACGGGTAT TTGAATATCT CTGGCTGGAT ACCAACTTGC GTAAAGCACT AGAAAACGAT
CAGTTGGTTA TTCACTATCA ACCGAAAATC ACCTGGCGTG GCGAAGTGCG CAGTCTGGAA
GCACTAGTAC GTTGGCAGTC ACCTGAACGT GGGTTGATTC CACCGTTGGA CTTCATTTCC
TACGCCGAAG AGTCAGGGCT AATTGTGCCT TTAGGCCGTT GGGTGATTCT CGATGTCGTA
CGCCAGGTGG CAAAGTGGCG GGATAAAGGC ATAAACCTGC GAGTGGCGGT AAATATTTCT
GCACGTCAGC TCGCCGATCA AACCATTTTC ACCGCCCTGA AACAGGTTCT CCAGGAACTC
AATTTTGAAT ACTGCCCTAT AGATGTTGAA CTGACAGAGA GTTGTCTGAT TGAGAATGAT
GAACTGGCAC TGTCTGTTAT TCAACAATTT AGCCAACTAG GTGCGCAAGT ACATCTGGAT
GATTTTGGTA CCGGCTACTC TTCACTTTCG CAACTGGCGC GCTTTCCGAT CGATGCCATC
AAACTTGACC AGGTTTTTGT TCGAGATATT CACAAACAAC CTGTCTCGCA GTCACTGGTC
CGGGCGATCG TCGCTGTGGC CCAGGCATTG AATCTTCAGG TGATCGCCGA AGGTGTAGAG
AGTGCAAAGG AAGATGCTTT TTTAACCAAG AACGGGATCA ATGAGCGGCA AGGATTTTTG
TTTGCCAAAC CGATGCCCGC CGTCGCCTTC GAACGCTGGT ATAAACGCTA TCTGAAGCGC
GCATAA
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| Protein sequence | MKTVRESTTL YNFLGSHNSY WRLTESSDVL RFSTTETTEP ERMLQLSAEQ AARIREMTVI
TSSLMMSLTV DESDLSVHLV GRKINKREWA GNASAWHDTP AVARDLSHGL SFAEQVVSEA
HSAIVILDSR GNIQRFNRLC EDYTGLKEHD VIGQSVFKLF MSRREAAASR RNNRVFFRSG
NAYEVELWIP TRKGQRLFLF RNKFVHSGSG KNEIFLICSG TDITEERRAQ ERLRILANTD
SITGLPNRNA MQELIDHAIN HADNNKVGVV YLDLDNFKKV NDAYGHLFGD QLLRDVSLAI
LSCLEHDQVL ARPGGDEFLV LASNTSQSAL EAMASRILTR LRLPFRIGLI EVYTSCSVGI
ALSPEHGSDS AAIIRHADTA MYTAKEGGRG QFCVFTPEMN QRVFEYLWLD TNLRKALEND
QLVIHYQPKI TWRGEVRSLE ALVRWQSPER GLIPPLDFIS YAEESGLIVP LGRWVILDVV
RQVAKWRDKG INLRVAVNIS ARQLADQTIF TALKQVLQEL NFEYCPIDVE LTESCLIEND
ELALSVIQQF SQLGAQVHLD DFGTGYSSLS QLARFPIDAI KLDQVFVRDI HKQPVSQSLV
RAIVAVAQAL NLQVIAEGVE SAKEDAFLTK NGINERQGFL FAKPMPAVAF ERWYKRYLKR
A
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